clockb (Danio rerio)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSDARG00000003631 T033619_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Clock
M01735_2.00 		Mus musculus
NNCAYRTGNN
NNCAYRTGNN		 PBM
Weirauch et al.(2014)
pTH5056 		0.882 0.902
CLOCK
M02789_2.00 		Homo sapiens
DACACGTGYH
DRCACGTGTH		 SELEX
Jolma et al.(2013)
CLOCK_1 		0.882 0.902
CLOCK
M04129_2.00 		Homo sapiens
NMCACGTGYN
NRCACGTGKN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX 		0.882 0.902
CLOCK
M08728_2.00 		Homo sapiens
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C 		0.882 0.902
Clock
M08760_2.00 		Mus musculus
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C 		0.882 0.902
Clock
M09473_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Clock_GSE39860 		0.882 0.902
CLOCK
M09849_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CLOCK_Q6 		0.882 0.902
CLOCK
M04130_2.00 		Homo sapiens
NRCRCRTGBH
DVCAYGYGYN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX 		0.882 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000014344 bHLH 25 75
ENSDARP00000120780 bHLH 25 75

Links

Other bHLH family TFs
Other Danio rerio TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O9_01187 Exophiala aquamarina A1O9_01187 N
BDDG_02000 Blastomyces dermatitidis BDDG_02000 I
CCM_03124 Cordyceps militaris CCM_03124 N
e_gw1.39.182.1 Nectria haematococca e_gw1.39.182.1 N
FFUJ_02119 Fusarium fujikuroi FFUJ_02119 N
FGRRES_03207_M Fusarium graminearum FGRRES_03207_M N
FOXG_15235 Fusarium oxysporum FOXG_15235 N
FPSE_05968 Fusarium pseudograminearum FPSE_05968 N
FVEG_12534 Fusarium verticillioides FVEG_12534 N
HCBG_00538 Histoplasma capsulatum HCBG_00538 I
HMPREF1120_04439 Exophiala dermatitidis HMPREF1120_04439 N
NechaG52568 Fusarium solani NechaG52568 N
PAAG_05745 Paracoccidioides sp lutzii PAAG_05745 I
PFICI_10661 Pestalotiopsis fici PFICI_10661 N
Z518_06607 Rhinocladiella mackenziei Z518_06607 N