clocka (Danio rerio)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSDARG00000011703 T033637_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Clock
M01735_2.00 		Mus musculus
NNCAYRTGNN
NNCAYRTGNN		 PBM
Weirauch et al.(2014)
pTH5056 		0.914 0.922
CLOCK
M02789_2.00 		Homo sapiens
DACACGTGYH
DRCACGTGTH		 SELEX
Jolma et al.(2013)
CLOCK_1 		0.914 0.922
CLOCK
M04129_2.00 		Homo sapiens
NMCACGTGYN
NRCACGTGKN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX 		0.914 0.922
CLOCK
M08728_2.00 		Homo sapiens
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C 		0.914 0.922
Clock
M08760_2.00 		Mus musculus
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C 		0.914 0.922
Clock
M09473_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Clock_GSE39860 		0.914 0.922
CLOCK
M09849_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CLOCK_Q6 		0.914 0.922
CLOCK
M04130_2.00 		Homo sapiens
NRCRCRTGBH
DVCAYGYGYN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX 		0.914 0.922
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000014377 bHLH 26 76
ENSDARP00000126787 bHLH 26 76

Links

Other bHLH family TFs
Other Danio rerio TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000015432 Ailuropoda melanoleuca ENSAMEG00000015432 I
ZSCAN29 Bos taurus ENSBTAG00000014478 I
ENSBTAP00000014826-D2 Bos grunniens ENSBTAP00000014826-D2 I
ZSCAN29 Canis familiaris ENSCAFG00000012056 I
ZSCAN29 Choloepus hoffmanni ENSCHOG00000009706 I
ZSCAN29 Callithrix jacchus ENSCJAG00000002903 I
ZSCAN29 Cavia porcellus ENSCPOG00000001782 I
ENSCSAG00000009079 Chlorocebus sabaeus ENSCSAG00000009079 I
ZSCAN29 Dasypus novemcinctus ENSDNOG00000018427 I
ZSCAN29 Equus caballus ENSECAG00000012289 I
ZSCAN29 Erinaceus europaeus ENSEEUG00000006869 I
ZSCAN29 Felis catus ENSFCAG00000002712 I
ZSCAN29 Homo sapiens ENSG00000140265 D
ZSCAN29 Gorilla gorilla ENSGGOG00000002879 I
ZSCAN29 Loxodonta africana ENSLAFG00000001195 I
ZSCAN29 Microcebus murinus ENSMICG00000010051 I
ZSCAN29 Macaca mulatta ENSMMUG00000017070 I
ZSCAN29 Monodelphis domestica ENSMODG00000017820 I
ENSMPUG00000010249 Mustela putorius furo ENSMPUG00000010249 I
Zscan29 Mus musculus ENSMUSG00000050619 I
ENSNLEG00000004938 Nomascus leucogenys ENSNLEG00000004938 I
ZSCAN29 Otolemur garnettii ENSOGAG00000000128 I
ENSOPRG00000015139 Ochotona princeps ENSOPRG00000015139 N
ENSP00000380174 Macaca fascicularis ENSP00000380174 I
ENSPANG00000018475 Papio anubis ENSPANG00000018475 I
ENSPPYG00000006412 Pongo abelii ENSPPYG00000006412 I
ZSCAN29 Pan troglodytes ENSPTRG00000006992 I
ZSCAN29 Pteropus vampyrus ENSPVAG00000008846 I
ENSSHAG00000012821 Sarcophilus harrisii ENSSHAG00000012821 I
ENSSSCG00000004709 Sus scrofa ENSSSCG00000004709 I
ENSSTOG00000006892 Ictidomys tridecemlineatus ENSSTOG00000006892 I
ENSTSYG00000004828 Tarsius syrichta ENSTSYG00000004828 I
ZSCAN29 Tursiops truncatus ENSTTRG00000016234 I
Myotis_brandtii_ZSCAN29_10025802 Myotis brandtii Myotis_brandtii_ZSCAN29_10025802 I