tcf3b (Gasterosteus aculeatus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSGACG00000012737 T034436_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.914 0.923
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.914 0.923
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.914 0.923
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.886 0.923
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.886 0.923
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.886 0.923
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.886 0.923
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.886 0.923
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.886 0.923
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.886 0.923
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.886 0.885
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.886 0.885
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.886 0.885
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.886 0.885
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.886 0.885
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.886 0.885
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.886 0.885
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.886 0.885
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.886 0.885
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.886 0.885
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.886 0.885
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.886 0.885
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.886 0.885
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.886 0.885
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.886 0.846
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.886 0.846
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.886 0.846
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.884 0.885
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.884 0.885
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.884 0.885
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.884 0.885
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.884 0.885
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.884 0.885
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.884 0.885
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.884 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000016836 bHLH 540 593
ENSGACP00000016839 bHLH 220 273

Links

Other bHLH family TFs
Other Gasterosteus aculeatus TFs

205 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009770 Calypte anna Aan_R009770 N 0.000
Afo_R014912 Aptenodytes forsteri Afo_R014912 N 0.000
Alligator_sinensis_CCG001918.1 Alligator sinensis Alligator_sinensis_CCG001918.1 N 0.000
Brh_R013449 Buceros rhinoceros Brh_R013449 N 0.000
TBPL1 Anolis carolinensis ENSACAG00000000340 N 0.000
ENSAMEG00000015958 Ailuropoda melanoleuca ENSAMEG00000015958 N 0.000
ENSAMXG00000004338 Astyanax mexicanus ENSAMXG00000004338 N 0.000
ENSAPLG00000007996 Anas platyrhynchos ENSAPLG00000007996 N 0.000
TBPL1 Bos taurus ENSBTAG00000035370 N 0.000
ENSCAFG00000000207 Canis familiaris ENSCAFG00000000207 N 0.000
TBPL1 Canis familiaris ENSCAFG00000023223 N 0.000
ENSCAFG00000029259 Canis familiaris ENSCAFG00000029259 N 0.000
TBPL1 Choloepus hoffmanni ENSCHOG00000007544 N 0.000
TBPL1 Callithrix jacchus ENSCJAG00000002794 N 0.000
TBPL1 Cavia porcellus ENSCPOG00000011899 N 0.000
ENSCSAG00000016709 Chlorocebus sabaeus ENSCSAG00000016709 N 0.000
tbpl1 Danio rerio ENSDARG00000036868 N 0.000
TBPL1 Dasypus novemcinctus ENSDNOG00000048107 N 0.000
TBPL1 Equus caballus ENSECAG00000019486 N 0.000
ENSFALG00000011864 Ficedula albicollis ENSFALG00000011864 N 0.000
TBPL1 Felis catus ENSFCAG00000022687 N 0.000
TBPL1 Homo sapiens ENSG00000028839 N 0.000
tbpl1 Gasterosteus aculeatus ENSGACG00000010959 N 0.000
TBPL1 Gallus gallus ENSGALG00000013981 N 0.000
TBPL1 Gorilla gorilla ENSGGOG00000028298 N 0.000
ENSGMOG00000019484 Gadus morhua ENSGMOG00000019484 N 0.000
ENSLACG00000000361 Latimeria chalumnae ENSLACG00000000361 N 0.000
TBPL1 Loxodonta africana ENSLAFG00000014064 N 0.000
ENSLOCG00000016230 Lepisosteus oculatus ENSLOCG00000016230 N 0.000
TBPL1 Meleagris gallopavo ENSMGAG00000013114 N 0.000
TBPL1 Microcebus murinus ENSMICG00000015740 N 0.000
TBPL1 Myotis lucifugus ENSMLUG00000002050 N 0.000
TBPL1 Monodelphis domestica ENSMODG00000017515 N 0.000
ENSMPUG00000014801 Mustela putorius furo ENSMPUG00000014801 N 0.000
Tbpl1 Mus musculus ENSMUSG00000071359 N 0.000
ENSNLEG00000014649 Nomascus leucogenys ENSNLEG00000014649 N 0.000
TBPL1 Ornithorhynchus anatinus ENSOANG00000013097 N 0.000
ENSOARG00000014646 Ovis aries ENSOARG00000014646 N 0.000
TBPL1 Oryctolagus cuniculus ENSOCUG00000007091 N 0.000
ENSONIG00000000447 Oreochromis niloticus ENSONIG00000000447 N 0.000
TBPL1 Ochotona princeps ENSOPRG00000017268 N 0.000
tbpl1 Oryzias latipes ENSORLG00000016505 N 0.000
ENSP00000237264 Macaca fascicularis ENSP00000237264 N 0.000
ENSP00000237264-D1 Bos grunniens ENSP00000237264-D1 N 0.000
ENSPANG00000020089 Papio anubis ENSPANG00000020089 N 0.000
TBPL1 Procavia capensis ENSPCAG00000001342 N 0.000
ENSPMAG00000002663 Petromyzon marinus ENSPMAG00000002663 N 0.000
ENSPPYG00000017023 Pongo abelii ENSPPYG00000017023 N 0.000
ENSPSIG00000003645 Pelodiscus sinensis ENSPSIG00000003645 N 0.000
TBPL1 Pan troglodytes ENSPTRG00000018624 N 0.000
TBPL1 Pteropus vampyrus ENSPVAG00000000468 N 0.000
Tbpl1 Rattus norvegicus ENSRNOG00000011114 N 0.000
TBPL1 Sorex araneus ENSSARG00000005911 N 0.000
ENSSHAG00000005937 Sarcophilus harrisii ENSSHAG00000005937 N 0.000
TBPL1 Sus scrofa ENSSSCG00000022387 N 0.000
ENSSTOG00000006786 Ictidomys tridecemlineatus ENSSTOG00000006786 N 0.000
TBPL1 Tupaia belangeri ENSTBEG00000013148 N 0.000
TBPL1 Taeniopygia guttata ENSTGUG00000011544 N 0.000
ENSTSYG00000005756 Tarsius syrichta ENSTSYG00000005756 N 0.000
TBPL1 Tursiops truncatus ENSTTRG00000009662 N 0.000
TBPL1 Vicugna pacos ENSVPAG00000006272 N 0.000
ENSXMAG00000004323 Xiphophorus maculatus ENSXMAG00000004323 N 0.000
Gfo_R006438 Geospiza fortis Gfo_R006438 N 0.000
Pvit_15344 Pogona vitticeps Pvit_15344 N 0.000
Tal_R007437 Tyto alba Tal_R007437 N 0.000
tbpl1 Xenopus tropicalis XB-GENE-488460 N 0.000
tbpl1.L Xenopus laevis XB-GENE-865785 N 0.000