clocka (Gasterosteus aculeatus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSGACG00000015939 T034456_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Clock
M01735_2.00 		Mus musculus
NNCAYRTGNN
NNCAYRTGNN		 PBM
Weirauch et al.(2014)
pTH5056 		0.914 0.922
CLOCK
M02789_2.00 		Homo sapiens
DACACGTGYH
DRCACGTGTH		 SELEX
Jolma et al.(2013)
CLOCK_1 		0.914 0.922
CLOCK
M04129_2.00 		Homo sapiens
NMCACGTGYN
NRCACGTGKN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX 		0.914 0.922
CLOCK
M08728_2.00 		Homo sapiens
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C 		0.914 0.922
Clock
M08760_2.00 		Mus musculus
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C 		0.914 0.922
Clock
M09473_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Clock_GSE39860 		0.914 0.922
CLOCK
M09849_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CLOCK_Q6 		0.914 0.922
CLOCK
M04130_2.00 		Homo sapiens
NRCRCRTGBH
DVCAYGYGYN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX 		0.914 0.922
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000021040 bHLH 20 70

Links

Other bHLH family TFs
Other Gasterosteus aculeatus TFs

77 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB00853.1 Alternaria brassicicola AB00853.1 N
AUEXF2481DRAFT_3008 Aureobasidium subglaciale AUEXF2481DRAFT_3008 N
Bcin05g08120 Botrytis cinerea Bcin05g08120 N
BDDG_01982 Blastomyces dermatitidis BDDG_01982 N
ACLA_030900 Aspergillus clavatus CADACLAG00003026 N
CADAFLAG00002223 Aspergillus flavus CADAFLAG00002223 N
AFUA_1G03710 Aspergillus fumigatus CADAFUAG00009026 N
CADANGAG00014038 Aspergillus niger CADANGAG00014038 N
ANIA_04021 Aspergillus nidulans CADANIAG00004663 N
ATEG_03838 Aspergillus terreus CADATEAG00008913 N
NFIA_020960 Neosartorya fischeri CADNFIAG00002119 N
COCC4DRAFT_55162 Bipolaris maydis COCC4DRAFT_55162 N
COCCADRAFT_34523 Bipolaris zeicola COCCADRAFT_34523 N
COCMIDRAFT_106480 Bipolaris oryzae COCMIDRAFT_106480 N
COCSADRAFT_210469 Bipolaris sorokiniana COCSADRAFT_210469 N
COCVIDRAFT_21644 Bipolaris victoriae COCVIDRAFT_21644 N
estExt_fgenesh1_pg.C_20466 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_20466 N
EURHEDRAFT_457871 Aspergillus ruber EURHEDRAFT_457871 N
EV44_g6245 Erysiphe necator EV44_g6245 N
fgenesh1_pg.00129_#_179 Aspergillus carbonarius fgenesh1_pg.00129_#_179 N
GMDG_06748 Pseudogymnoascus destructans GMDG_06748 N
H101_04716 Trichophyton interdigitale H101_04716 N
H102_03391 Trichophyton rubrum H102_03391 N
H105_03409 Trichophyton soudanense H105_03409 N
HCBG_00525 Histoplasma capsulatum HCBG_00525 N
LEMA_P067460.1 Leptosphaeria maculans LEMA_P067460.1 N
M438DRAFT_352021 Aureobasidium pullulans M438DRAFT_352021 N
MBM_03839 Marssonina brunnea MBM_03839 N
MCYG_05803 Microsporum canis MCYG_05803 N
MGYG_02906 Microsporum gypseum MGYG_02906 N
OIDMADRAFT_168022 Oidiodendron maius OIDMADRAFT_168022 N
PAAG_05759 Paracoccidioides sp lutzii PAAG_05759 N
PITC_072910 Penicillium italicum PITC_072910 N
PMAA_055260 Penicillium marneffei PMAA_055260 N
PMAA_055260 Talaromyces marneffei PMAA_055260 N
PTRG_10615 Pyrenophora triticirepentis PTRG_10615 N
PTT_14132 Pyrenophora teres PTT_14132 N
PV09_00027 Verruconis gallopava PV09_00027 N
SBOR_6873 Sclerotinia borealis SBOR_6873 N
SETTUDRAFT_162780 Setosphaeria turcica SETTUDRAFT_162780 N
SNOG_00063 Phaeosphaeria nodorum SNOG_00063 N
SNOG_00063 Stagonospora nodorum SNOG_00063 N
SS1G_12081 Sclerotinia sclerotiorum SS1G_12081 N
TEQG_00827 Trichophyton equinum TEQG_00827 N
TESG_04726 Trichophyton tonsurans TESG_04726 N
TSTA_017610 Talaromyces stipitatus TSTA_017610 N
UREG_01812 Uncinocarpus reesii UREG_01812 N
V499_07705 Pseudogymnoascus pannorum V499_07705 N
W97_06537 Coniosporium apollinis W97_06537 N