CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSLACG00000001157 *(Latimeria chalumnae)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00010 (HLH)	IPR001092	ENSLACG00000001157	T034786_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Usf1 M01732_2.00	Mus musculus	NRYCACGTGNN	NNCACGTGRYN	PBM Weirauch et al.(2014) pTH4376	0.861	0.944
USF1 M02792_2.00	Homo sapiens	RNCACGTGRY	RYCACGTGNY	SELEX Jolma et al.(2013) USF1_1	0.861	0.944
USF1 M04146_2.00	Homo sapiens	NVCACGTGVCN	NGBCACGTGBN	SELEX Yin et al.(2017) USF1_FL_HT-SELEX	0.861	0.944
USF1 M08056_2.00	Homo sapiens	RGTCACRTGVB	VBCAYGTGACY	ChIP-seq Mathelier et al.(2014) MA0093.2	0.861	0.944
USF1 M07807_2.00	Homo sapiens	VGTCACGTGRBSVVV	BBBSVYCACGTGACB	ChIP-seq Gerstein et al.(2012) A549_USF1_HudsonAlpha	0.861	0.944
USF1 M07808_2.00	Homo sapiens	VVGTCACGTGVBSVS	SBSVBCACGTGACBB	ChIP-seq Gerstein et al.(2012) GM12878_USF1_HudsonAlpha	0.861	0.944
USF1 M07809_2.00	Homo sapiens	RGTCACGTGVBSVNN	NNBSVBCACGTGACY	ChIP-seq Gerstein et al.(2012) H1-hESC_USF1_HudsonAlpha	0.861	0.944
USF1 M07810_2.00	Homo sapiens	VGTCACGTGRB	VYCACGTGACB	ChIP-seq Gerstein et al.(2012) HepG2_USF1_HudsonAlpha	0.861	0.944
USF1 M07811_2.00	Homo sapiens	NVGTCACGTGVSSV	BSSBCACGTGACBN	ChIP-seq Gerstein et al.(2012) K562_USF1_HudsonAlpha	0.861	0.944
USF1 M08733_2.00	Homo sapiens	VGTCACGTGVBS	SVBCACGTGACB	Misc Kulakovskiy et al.(2013) USF1_HUMAN.H11MO.0.A	0.861	0.944
Usf1 M08756_2.00	Mus musculus	NNGTCACGTGVBS	SVBCACGTGACNN	Misc Kulakovskiy et al.(2013) USF1_MOUSE.H11MO.0.A	0.861	0.944
USF1 M09460_2.00	Homo sapiens	YCACGTGRBN	NVYCACGTGR	Misc Heinz et al.(2010) GM12878-Usf1_GSE32465	0.861	0.944
USF1 M09867_2.00	Homo sapiens	NNRYCACGTGRYNN	NNRYCACGTGRYNN	Transfac Matys et al.(2006) V$USF_01	0.861	0.944
USF1 M09868_2.00	Homo sapiens	NNRNCAYRTGNYNN	NNRNCAYRTGNYNN	Transfac Matys et al.(2006) V$USF_02	0.861	0.944
USF1 M09869_2.00	Homo sapiens	HCACGTGH	DCACGTGD	Transfac Matys et al.(2006) V$USF_C	0.861	0.944
USF1 M04147_2.00	Homo sapiens	VHCAYGTGAYN	NRTCACRTGDB	SELEX Yin et al.(2017) USF1_FL_Methyl-HT-SELEX	0.861	0.944
Usf2 M01752_2.00	Mus musculus	NNCACGTGAN	NTCACGTGNN	PBM Weirauch et al.(2014) pTH5265	0.858	0.926
USF2 M04076_2.00	Homo sapiens	NVCACGTGVCN	NGBCACGTGBN	SELEX Yin et al.(2017) USF2_eDBD_HT-SELEX	0.858	0.926
USF2 M08050_2.00	Homo sapiens	NNVYCACGTGACHNNN	NNNDGTCACGTGRBNN	ChIP-seq Mathelier et al.(2014) MA0526.2	0.858	0.926
USF2 M07785_2.00	Homo sapiens	NGTCACGTGRBSVVV	BBBSVYCACGTGACN	ChIP-seq Gerstein et al.(2012) GM12878_USF2_Stanford	0.858	0.926
USF2 M07786_2.00	Homo sapiens	NVGTCACGTGRBSVVV	BBBSVYCACGTGACBN	ChIP-seq Gerstein et al.(2012) H1-hESC_USF2_Stanford	0.858	0.926
USF2 M07787_2.00	Homo sapiens	RGTCACGTGVB	VBCACGTGACY	ChIP-seq Gerstein et al.(2012) HeLa-S3_USF2_Stanford	0.858	0.926
USF2 M07788_2.00	Homo sapiens	NGTCACGTGRBSV	BSVYCACGTGACN	ChIP-seq Gerstein et al.(2012) HepG2_USF2_Stanford	0.858	0.926
USF2 M07789_2.00	Homo sapiens	RGTCACGTGRBSV	BSVYCACGTGACY	ChIP-seq Gerstein et al.(2012) K562_USF2_Stanford	0.858	0.926
USF2 M08715_2.00	Homo sapiens	NVGTCACGTGVBSVNNVNB	VNBNNBSVBCACGTGACBN	Misc Kulakovskiy et al.(2013) USF2_HUMAN.H11MO.0.A	0.858	0.926
Usf2 M08777_2.00	Mus musculus	NVGTCACGTGVBSVNNVNB	VNBNNBSVBCACGTGACBN	Misc Kulakovskiy et al.(2013) USF2_MOUSE.H11MO.0.A	0.858	0.926
Usf2 M09479_2.00	Mus musculus	NNCAYGTGVY	RBCACRTGNN	Misc Heinz et al.(2010) C2C12-Usf2_GSE36030	0.858	0.926
USF2 M09812_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$USF2_01	0.858	0.926
USF2 M09813_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$USF2_02	0.858	0.926
USF2 M09814_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$USF2_Q6_01	0.858	0.926
USF2 M09815_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$USF2_Q6	0.858	0.926
USF2 M04077_2.00	Homo sapiens	VNCAYGTGACN	NGTCACRTGNB	SELEX Yin et al.(2017) USF2_eDBD_Methyl-HT-SELEX	0.858	0.926
For this family, TFs with SR scores > 0.838* will likely have a similar motif*