USF1 (Loxodonta africana)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSLAFG00000011338 T034926_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.914 1.000
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.914 1.000
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.914 1.000
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.914 1.000
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.914 1.000
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.914 1.000
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.914 1.000
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.914 1.000
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.914 1.000
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.914 1.000
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.914 1.000
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.914 1.000
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.914 1.000
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.914 1.000
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.914 1.000
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000009475 bHLH 200 255

Links

Other bHLH family TFs
Other Loxodonta africana TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_07610 Capronia coronata A1O1_07610 I
A1O3_06262 Capronia epimyces A1O3_06262 I
A1O5_11944 Cladophialophora psammophila A1O5_11944 I
A1O9_08712 Exophiala aquamarina A1O9_08712 I
AOL_s00054g670 Arthrobotrys oligospora AOL_s00054g670 I
ARB_03738 Arthroderma benhamiae ARB_03738 I
AUEXF2481DRAFT_41144 Aureobasidium subglaciale AUEXF2481DRAFT_41144 I
BAUCODRAFT_67601 Baudoinia compniacensis BAUCODRAFT_67601 I
Bcin08g04780 Botrytis cinerea Bcin08g04780 I
BDDG_08495 Blastomyces dermatitidis BDDG_08495 I
ACLA_049580 Aspergillus clavatus CADACLAG00004910 I
CADAFLAG00002016 Aspergillus flavus CADAFLAG00002016 I
AFUA_4G10380 Aspergillus fumigatus CADAFUAG00008049 I
CADANGAG00004357 Aspergillus niger CADANGAG00004357 I
ANIA_01997 Aspergillus nidulans CADANIAG00008662 I
CADAORAG00001723 Aspergillus oryzae CADAORAG00001723 I
ATEG_00873 Aspergillus terreus CADATEAG00010200 I
NFIA_105690 Neosartorya fischeri CADNFIAG00010314 I
CFIO01_11889 Colletotrichum fioriniae CFIO01_11889 I
CH063_09026 Colletotrichum higginsianum CH063_09026 I
CHGG_09160 Chaetomium globosum CHGG_09160 I
CIMG_00576 Coccidioides immitis CIMG_00576 I
CMQ_5444 Grosmannia clavigera CMQ_5444 I
Cob_11775 Colletotrichum orbiculare Cob_11775 I
COCC4DRAFT_133033 Bipolaris maydis COCC4DRAFT_133033 I
COCCADRAFT_94053 Bipolaris zeicola COCCADRAFT_94053 I
COCMIDRAFT_99994 Bipolaris oryzae COCMIDRAFT_99994 I
COCSADRAFT_79683 Bipolaris sorokiniana COCSADRAFT_79683 I
COCVIDRAFT_96597 Bipolaris victoriae COCVIDRAFT_96597 I
CPC735_056690 Coccidioides posadasii CPC735_056690 I
CSUB01_01982 Colletotrichum sublineola CSUB01_01982 I
DOTSEDRAFT_43570 Dothistroma septosporum DOTSEDRAFT_43570 I
DRE_06681 Drechslerella stenobrocha DRE_06681 I
EPUS_03757 Endocarpon pusillum EPUS_03757 I
estExt_fgenesh1_pg.C_sca_2_chr3_3_00476 Nectria haematococca estExt_fgenesh1_pg.C_sca_2_chr3_3_00476 I
estExt_fgenesh1_pm.C_170061 Mycosphaerella fijiensis estExt_fgenesh1_pm.C_170061 I
estExt_fgenesh2_pg.C_60502 Neurospora discreta estExt_fgenesh2_pg.C_60502 I
estExt_Genewise1.C_110425 Cochliobolus heterostrophus C5 estExt_Genewise1.C_110425 I
estExt_Genewise1Plus.C_90390 Cryphonectria parasitica estExt_Genewise1Plus.C_90390 I
EURHEDRAFT_446059 Aspergillus ruber EURHEDRAFT_446059 I
EV44_g5988 Erysiphe necator EV44_g5988 I
e_gw1.00609.341.1 Aspergillus carbonarius e_gw1.00609.341.1 I
F503_01784 Ophiostoma piceae uamh F503_01784 I
FFUJ_06125 Fusarium fujikuroi FFUJ_06125 I
FGRRES_08617 Fusarium graminearum FGRRES_08617 I
FOXG_03183 Fusarium oxysporum FOXG_03183 I
FPSE_06027 Fusarium pseudograminearum FPSE_06027 I
FVEG_02052 Fusarium verticillioides FVEG_02052 I
GGTG_00870 Gaeumannomyces graminis GGTG_00870 I
GLRG_05374 Colletotrichum graminicola GLRG_05374 I
GMDG_02792 Pseudogymnoascus destructans GMDG_02792 I
GSTUM_00001918001 Tuber melanosporum GSTUM_00001918001 I
gw1.3.437.1 Mycosphaerella graminicola gw1.3.437.1 I
H072_5317 Dactylellina haptotyla H072_5317 I
H101_07848 Trichophyton interdigitale H101_07848 I
H102_01498 Trichophyton rubrum H102_01498 I
H105_01514 Trichophyton soudanense H105_01514 I
HCBG_04116 Histoplasma capsulatum HCBG_04116 D
HMPREF1120_08244 Exophiala dermatitidis HMPREF1120_08244 I
HMPREF1624_03033 Sporothrix schenckii HMPREF1624_03033 I
LEMA_P014910.1 Leptosphaeria maculans LEMA_P014910.1 I
M437DRAFT_16101 Aureobasidium melanogenum M437DRAFT_16101 I
M438DRAFT_281064 Aureobasidium pullulans M438DRAFT_281064 I
M7I_3686 Glarea lozoyensis M7I_3686 I
MAC_03505 Metarhizium acridum MAC_03505 I
MAJ_00129 Metarhizium majus MAJ_00129 I
MANI_016594 Metarhizium anisopliae MANI_016594 I
MAPG_07622 Magnaporthe poae MAPG_07622 I
MBR_02509 Metarhizium brunneum MBR_02509 I
MCYG_06457 Microsporum canis MCYG_06457 I
MCYG_06457 Arthroderma otae MCYG_06457 I
MGG_06507 Magnaporthe oryzae MGG_06507 I
MGU_00504 Metarhizium guizhouense MGU_00504 I
MGYG_06906 Microsporum gypseum MGYG_06906 I
MYCFIDRAFT_203216 Pseudocercospora fijiensis MYCFIDRAFT_203216 I
Mycgr3G14264 Zymoseptoria tritici Mycgr3G14264 I
MYCTH_2306491 Myceliophthora thermophila MYCTH_2306491 I
NCU03975 Neurospora crassa NCU03975 D
NechaG99633 Fusarium solani NechaG99633 I
NEUTE1DRAFT_148828 Neurospora tetrasperma NEUTE1DRAFT_148828 I
OCS_06043 Ophiocordyceps sinensis OCS_06043 I
OIDMADRAFT_50778 Oidiodendron maius OIDMADRAFT_50778 I
PAAG_07074 Paracoccidioides sp lutzii PAAG_07074 I
PABG_03071 Paracoccidioides brasiliensis PABG_03071 I
Pc22g12820 Penicillium chrysogenum Pc22g12820 I
PCH_Pc22g12820 Penicillium rubens PCH_Pc22g12820 I
PDE_03936 Penicillium oxalicum PDE_03936 I
PDIP_24880 Penicillium digitatum PDIP_24880 I
PEX1_001370 Penicillium expansum PEX1_001370 I
PFICI_10100 Pestalotiopsis fici PFICI_10100 I
PITC_045590 Penicillium italicum PITC_045590 I
PMAA_040270 Talaromyces marneffei PMAA_040270 I
PMAA_040270 Penicillium marneffei PMAA_040270 I
PODANS_4_8860 Podospora anserina PODANS_4_8860 I
PTRG_01511 Pyrenophora triticirepentis PTRG_01511 I
PTT_20225 Pyrenophora teres PTT_20225 I
PV04_10672 Capronia semiimmersa PV04_10672 I
PV05_02968 Exophiala xenobiotica PV05_02968 I
PV06_06720 Exophiala oligosperma PV06_06720 I
PV07_08494 Cladophialophora immunda PV07_08494 I
PV08_07582 Exophiala spinifera PV08_07582 I
PV09_06507 Verruconis gallopava PV09_06507 I
PV10_01321 Exophiala mesophila PV10_01321 I
PV11_05741 Exophiala sideris PV11_05741 I
PVAR5_7762 Byssochlamys spectabilis PVAR5_7762 I
S40288_03010 Stachybotrys chartarum S40288_03010 I
SAPIO_CDS8197 Scedosporium apiospermum SAPIO_CDS8197 I
SBOR_3226 Sclerotinia borealis SBOR_3226 I
SEPMUDRAFT_148618 Sphaerulina musiva SEPMUDRAFT_148618 I
SETTUDRAFT_18480 Setosphaeria turcica SETTUDRAFT_18480 I
SMAC_06146 Sordaria macrospora SMAC_06146 I
SNOG_06177 Stagonospora nodorum SNOG_06177 I
SPBR_01518 Sporothrix brasiliensis SPBR_01518 I
TEQG_03828 Trichophyton equinum TEQG_03828 I
TESG_05283 Trichophyton tonsurans TESG_05283 I
THITE_2109856 Thielavia terrestris THITE_2109856 I
TRIATDRAFT_284984 Trichoderma atroviride TRIATDRAFT_284984 I
TRIREDRAFT_38080 Trichoderma reesei TRIREDRAFT_38080 I
TRIVIDRAFT_135225 Trichoderma virens TRIVIDRAFT_135225 I
TRV_06585 Trichophyton verrucosum TRV_06585 I
TSTA_078430 Talaromyces stipitatus TSTA_078430 I
UCRNP2_6461 Neofusicoccum parvum UCRNP2_6461 I
V499_01136 Pseudogymnoascus pannorum V499_01136 I
VDAG_01569 Verticillium dahliae VDAG_01569 I
VDBG_08073 Verticillium albo atrum VDBG_08073 I
VDBG_08073 Verticillium alfalfae VDBG_08073 I
W97_06244 Coniosporium apollinis W97_06244 I
X797_000547 Metarhizium robertsii X797_000547 I
Z518_07759 Rhinocladiella mackenziei Z518_07759 I
Z519_05789 Cladophialophora bantiana Z519_05789 I