msc (Oryzias latipes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSORLG00000008030 T036404_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Msc
M01730_2.00 		Mus musculus
NVCRKMYGBN
NVCRKMYGBN		 PBM
Weirauch et al.(2014)
pTH5112 		0.886 0.962
MSC
M02801_2.00 		Homo sapiens
AACAGCTGTT
AACAGCTGTT		 SELEX
Jolma et al.(2013)
MSC_1 		0.886 0.962
MSC
M04183_2.00 		Homo sapiens
NRMCAGMTGBYN
NRVCAKCTGKYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_1 		0.886 0.962
MSC
M04184_2.00 		Homo sapiens
NRVCAYVTGBYN
NRVCABRTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_2 		0.886 0.962
MSC
M04187_2.00 		Homo sapiens
NRMCAGCTGBYV
BRVCAGCTGKYN		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_1 		0.886 0.962
MSC
M04188_2.00 		Homo sapiens
BRMCATATGKYN
NRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_2 		0.886 0.962
MSC
M04185_2.00 		Homo sapiens
NRVCAGCTGBBN
NVVCAGCTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_1 		0.886 0.962
MSC
M04186_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_2 		0.886 0.962
MSC
M04189_2.00 		Homo sapiens
BRACAGCTGTYV
BRACAGCTGTYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_1 		0.886 0.962
MSC
M04190_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_2 		0.886 0.962
Tcf21
M01746_2.00 		Mus musculus
RMCAKMTGK
MCAKMTGKY		 PBM
Weirauch et al.(2014)
pTH5087 		0.886 0.942
Tcf21
M02819_2.00 		Mus musculus
VNAACAGCTGTTVN
NBAACAGCTGTTNB		 SELEX
Jolma et al.(2013)
Tcf21_1 		0.886 0.942
TCF21
M04092_2.00 		Homo sapiens
BAACAGCTGBYN
NRVCAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_1 		0.886 0.942
TCF21
M04093_2.00 		Homo sapiens
NRCCATATGKYV
BRMCATATGGYN		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_2 		0.886 0.942
TCF21
M04094_2.00 		Homo sapiens
BAACAGCTGTYV
BRACAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_1 		0.886 0.942
TCF21
M04095_2.00 		Homo sapiens
BACCATATGKYV
BRMCATATGGTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_2 		0.886 0.942
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000010073 bHLH 71 123

Links

Other bHLH family TFs
Other Oryzias latipes TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL010031 Aedes aegypti AAEL010031 I 0.877
AALB007560 Anopheles albimanus AALB007560 I 0.877
AALB007822 Anopheles albimanus AALB007822 I 0.877
Aan_R009769 Calypte anna Aan_R009769 I 0.886
AARA007787 Anopheles arabiensis AARA007787 I 0.877
AATE012411 Anopheles atroparvus AATE012411 I 0.877
ACEP13483 Atta cephalotes ACEP13483 I 0.868
ACHR000018 Anopheles christyi ACHR000018 I 0.877
ACOM025280 Anopheles coluzzii ACOM025280 I 0.877
ACUA017871 Anopheles culicifacies ACUA017871 I 0.877
ACYPI002601 Acyrthosiphon pisum ACYPI002601 I 0.879
ADIR008037 Anopheles dirus ADIR008037 I 0.877
AEPI000467 Anopheles epiroticus AEPI000467 I 0.877
Afo_R014913 Aptenodytes forsteri Afo_R014913 I 0.886
AFUN008043 Anopheles funestus AFUN008043 I 0.877
AGAP007124 Anopheles gambiae AGAP007124 I 0.877
Alligator_sinensis_CCG001917.1 Alligator sinensis Alligator_sinensis_CCG001917.1 I 0.886
AMAM016192 Anopheles maculatus AMAM016192 I 0.877
AMEC000644 Anopheles melas AMEC000644 I 0.877
AMEM011707 Anopheles merus AMEM011707 I 0.877
AMIN011264 Anopheles minimus AMIN011264 I 0.877
AQUA002051 Anopheles quadriannulatus AQUA002051 I 0.877
ASTEI06898 Anopheles stephensi ASTEI06898 I 0.877
A_02746 Schistosoma haematobium A_02746 I 0.855
BGIBMGA012033 Bombyx mori BGIBMGA012033 I 0.903
BGLB011346 Biomphalaria glabrata BGLB011346 I 0.862
Brh_R005605 Buceros rhinoceros Brh_R005605 I 0.886
CapteG80741 Capitella teleta CapteG80741 I 0.914
Cflo_04912--XP_001121050.1_APIME Camponotus floridanus Cflo_04912--XP_001121050.1_APIME I 0.886
CGI_10026944 Crassostrea gigas CGI_10026944 I 0.914
CLEC012607 Cimex lectularius CLEC012607 I 0.883
CPIJ016930 Culex quinquefasciatus CPIJ016930 I 0.877
CpipJ_CPIJ016930 Culex pipiens CpipJ_CPIJ016930 I 0.877
csin111822 Clonorchis sinensis csin111822 I 0.855
D915_08809 Fasciola hepatica D915_08809 I 0.855
DAPPUDRAFT_37461 Daphnia pulex DAPPUDRAFT_37461 I 0.883
ECANG7_04949 Echinococcus canadensis ECANG7_04949 I 0.842
EmuJ_000624300 Echinococcus multilocularis EmuJ_000624300 I 0.842
TCF21 Anolis carolinensis ENSACAG00000010325 I 0.886
MSC Anolis carolinensis ENSACAG00000014585 I 0.886
ENSAMEG00000005942 Ailuropoda melanoleuca ENSAMEG00000005942 I 0.886
ENSAMEG00000015953 Ailuropoda melanoleuca ENSAMEG00000015953 I 0.886
ENSAMXG00000000487 Astyanax mexicanus ENSAMXG00000000487 I 0.855
ENSAMXG00000004351 Astyanax mexicanus ENSAMXG00000004351 I 0.903
ENSAPLG00000008024 Anas platyrhynchos ENSAPLG00000008024 I 0.886
MSC Bos taurus ENSBTAG00000005404 I 0.886
TCF21 Bos taurus ENSBTAG00000021827 I 0.886
ENSBTAP00000044112-D1 Bos grunniens ENSBTAP00000044112-D1 I 0.886
ENSBTAP00000052463-D1 Bos grunniens ENSBTAP00000052463-D1 I 0.886
TCF21 Canis familiaris ENSCAFG00000000205 I 0.886
MSC Canis familiaris ENSCAFG00000007923 I 0.886
TCF21 Callithrix jacchus ENSCJAG00000002811 I 0.886
MSC Callithrix jacchus ENSCJAG00000007766 I 0.886
ENSCPOG00000004726 Cavia porcellus ENSCPOG00000004726 I 0.886
TCF21 Cavia porcellus ENSCPOG00000024201 I 0.886
ENSCSAG00000013709 Chlorocebus sabaeus ENSCSAG00000013709 I 0.886
ENSCSAG00000016705 Chlorocebus sabaeus ENSCSAG00000016705 I 0.886
tcf21 Danio rerio ENSDARG00000036869 I 0.886
msc Danio rerio ENSDARG00000045353 I 0.914
MSC Dasypus novemcinctus ENSDNOG00000019019 I 0.886
TCF21 Dasypus novemcinctus ENSDNOG00000042846 I 0.886
MSC Equus caballus ENSECAG00000008333 I 0.886
TCF21 Equus caballus ENSECAG00000019197 I 0.886
MSC Erinaceus europaeus ENSEEUG00000005021 I 0.886
TCF21 Echinops telfairi ENSETEG00000012492 I 0.886
ENSFALG00000008455 Ficedula albicollis ENSFALG00000008455 I 0.886
ENSFALG00000011861 Ficedula albicollis ENSFALG00000011861 I 0.886
TCF21 Felis catus ENSFCAG00000031261 I 0.886
TCF21 Homo sapiens ENSG00000118526 D 0.886
MSC Homo sapiens ENSG00000178860 D 0.886
msc Gasterosteus aculeatus ENSGACG00000002802 I 0.914
tcf21 Gasterosteus aculeatus ENSGACG00000010957 I 0.914
ENSGALG00000019470 Gallus gallus ENSGALG00000019470 I 0.886
TCF21 Gallus gallus ENSGALG00000029024 I 0.886
TCF21 Gorilla gorilla ENSGGOG00000005460 I 0.886
MSC Gorilla gorilla ENSGGOG00000009955 I 0.886
ENSGMOG00000019481 Gadus morhua ENSGMOG00000019481 I 0.914
ENSLACG00000005024 Latimeria chalumnae ENSLACG00000005024 I 0.886
ENSLACG00000014348 Latimeria chalumnae ENSLACG00000014348 I 0.866
MSC Loxodonta africana ENSLAFG00000002649 I 0.886
TCF21 Loxodonta africana ENSLAFG00000009507 I 0.886
ENSLOCG00000003912 Lepisosteus oculatus ENSLOCG00000003912 I 0.886
ENSLOCG00000016232 Lepisosteus oculatus ENSLOCG00000016232 I 0.886
ENSMEUG00000005491 Macropus eugenii ENSMEUG00000005491 I 0.886
TCF21 Meleagris gallopavo ENSMGAG00000013117 I 0.886
ENSMICG00000014144 Microcebus murinus ENSMICG00000014144 I 0.886
MSC Myotis lucifugus ENSMLUG00000008572 I 0.886
TCF21 Myotis lucifugus ENSMLUG00000009194 I 0.886
MSC Macaca mulatta ENSMMUG00000000947 I 0.886
TCF21 Macaca mulatta ENSMMUG00000002871 I 0.886
MSC Monodelphis domestica ENSMODG00000007225 I 0.886
TCF21 Monodelphis domestica ENSMODG00000017516 I 0.886
ENSMPUG00000010593 Mustela putorius furo ENSMPUG00000010593 I 0.886
ENSMPUG00000014798 Mustela putorius furo ENSMPUG00000014798 I 0.886
Msc Mus musculus ENSMUSG00000025930 D 0.886
Tcf21 Mus musculus ENSMUSG00000045680 D 0.886
ENSNLEG00000011452 Nomascus leucogenys ENSNLEG00000011452 I 0.886
ENSNLEG00000014647 Nomascus leucogenys ENSNLEG00000014647 I 0.886
TCF21 Ornithorhynchus anatinus ENSOANG00000013098 I 0.886
ENSOARG00000004844 Ovis aries ENSOARG00000004844 I 0.886
ENSOARG00000014623 Ovis aries ENSOARG00000014623 I 0.886
MSC Oryctolagus cuniculus ENSOCUG00000007208 I 0.886
TCF21 Oryctolagus cuniculus ENSOCUG00000017761 I 0.886
MSC Otolemur garnettii ENSOGAG00000013827 I 0.886
TCF21 Otolemur garnettii ENSOGAG00000034073 I 0.886
ENSONIG00000000446 Oreochromis niloticus ENSONIG00000000446 I 0.886
ENSONIG00000014278 Oreochromis niloticus ENSONIG00000014278 I 0.914
tcf21 Oryzias latipes ENSORLG00000016491 I 0.886
ENSP00000321445 Macaca fascicularis ENSP00000321445 I 0.886
ENSP00000356857 Macaca fascicularis ENSP00000356857 I 0.886
ENSPANG00000022301 Papio anubis ENSPANG00000022301 I 0.886
ENSPANG00000024238 Papio anubis ENSPANG00000024238 I 0.886
MSC Procavia capensis ENSPCAG00000004330 I 0.886
ENSPCAG00000006459 Procavia capensis ENSPCAG00000006459 I 0.886
ENSPFOG00000010821 Poecilia formosa ENSPFOG00000010821 I 0.886
ENSPFOG00000020725 Poecilia formosa ENSPFOG00000020725 I 0.914
ENSPMAG00000000379 Petromyzon marinus ENSPMAG00000000379 I 0.914
ENSPPYG00000017022 Pongo abelii ENSPPYG00000017022 I 0.886
ENSPPYG00000018665 Pongo abelii ENSPPYG00000018665 I 0.886
ENSPSIG00000003604 Pelodiscus sinensis ENSPSIG00000003604 I 0.886
TCF21 Pan troglodytes ENSPTRG00000018622 I 0.886
MSC Pan troglodytes ENSPTRG00000020339 I 0.886
MSC Pteropus vampyrus ENSPVAG00000009083 I 0.886
TCF21 Pteropus vampyrus ENSPVAG00000009085 I 0.886
Msc Rattus norvegicus ENSRNOG00000007540 I 0.886
Tcf21 Rattus norvegicus ENSRNOG00000016700 I 0.886
ENSSHAG00000002801 Sarcophilus harrisii ENSSHAG00000002801 I 0.886
ENSSHAG00000004870 Sarcophilus harrisii ENSSHAG00000004870 I 0.886
ENSSSCG00000004174 Sus scrofa ENSSSCG00000004174 I 0.886
MSC Sus scrofa ENSSSCG00000006187 I 0.886
ENSSTOG00000023733 Ictidomys tridecemlineatus ENSSTOG00000023733 I 0.886
ENSSTOG00000024832 Ictidomys tridecemlineatus ENSSTOG00000024832 I 0.886
MSC Tupaia belangeri ENSTBEG00000014659 I 0.886
MSC Taeniopygia guttata ENSTGUG00000011502 I 0.886
TCF21 Taeniopygia guttata ENSTGUG00000011548 I 0.886
msc Tetraodon nigroviridis ENSTNIG00000008188 I 0.914
tcf21 Tetraodon nigroviridis ENSTNIG00000016326 I 0.886
tcf21 Takifugu rubripes ENSTRUG00000003919 I 0.886
msc Takifugu rubripes ENSTRUG00000012425 I 0.914
TCF21 Tursiops truncatus ENSTTRG00000009645 I 0.886
MSC Tursiops truncatus ENSTTRG00000017260 I 0.886
MSC Vicugna pacos ENSVPAG00000000378 I 0.886
TCF21 Vicugna pacos ENSVPAG00000006271 I 0.886
ENSXMAG00000004322 Xiphophorus maculatus ENSXMAG00000004322 I 0.886
ENSXMAG00000010332 Xiphophorus maculatus ENSXMAG00000010332 I 0.914
fgenesh2_pg.scaffold_201000026 Branchiostoma floridae fgenesh2_pg.scaffold_201000026 I 0.843
fgenesh2_pg.scaffold_201000027 Branchiostoma floridae fgenesh2_pg.scaffold_201000027 I 0.843
fgenesh2_pg.scaffold_201000028 Branchiostoma floridae fgenesh2_pg.scaffold_201000028 I 0.890
fgenesh2_pg.scaffold_201000029 Branchiostoma floridae fgenesh2_pg.scaffold_201000029 I 0.839
GB42177 Apis mellifera GB42177 I 0.903
Gfo_R006439 Geospiza fortis Gfo_R006439 I 0.886
gw.912.11.1 Branchiostoma floridae gw.912.11.1 I 0.890
HelroG188977 Helobdella robusta HelroG188977 I 0.842
HHAL000695-PA Halyomorpha halys HHAL000695-PA I 0.855
Hsal_01862--XP_001122645.1_APIME Harpegnathos saltator Hsal_01862--XP_001122645.1_APIME I 0.875
ISCW019706 Ixodes scapularis ISCW019706 I 0.851
KGM_20305 Danaus plexippus KGM_20305 I 0.903
L798_06836 Zootermopsis nevadensis L798_06836 I 0.903
LDEC005027 Leptinotarsa decemlineata LDEC005027 I 0.903
LotgiG99224 Lottia gigantea LotgiG99224 I 0.890
MCOS_0000023201 Mesocestoides corti MCOS_0000023201 I 0.842
Myotis_brandtii_TCF21_10035690 Myotis brandtii Myotis_brandtii_TCF21_10035690 I 0.886
Ogr02938 Ophisaurus gracilis Ogr02938 I 0.886
PHUM294350 Pediculus humanus PHUM294350 I 0.868
RPRC001590 Rhodnius prolixus RPRC001590 I 0.855
Sakowv30031408m.g Saccoglossus kowalevskii Sakowv30031408m.g I 0.879
SCUD_0001558401 Schistosoma curassoni SCUD_0001558401 I 0.855
SINV12414 Solenopsis invicta SINV12414 I 0.868
Sjc_0073180 Schistosoma japonicum Sjc_0073180 I 0.855
SMAR006929 Strigamia maritima SMAR006929 I 0.903
Smp_022610 Schistosoma mansoni Smp_022610 I 0.855
SMRZ_0001749101 Schistosoma margrebowiei SMRZ_0001749101 I 0.855
SMTD_0000660301 Schistosoma mattheei SMTD_0000660301 I 0.855
SPU_012008 Strongylocentrotus purpuratus SPU_012008 I 0.862
T265_00953 Opisthorchis viverrini T265_00953 I 0.855
TASK_0000025401 Taenia asiatica TASK_0000025401 I 0.842
TC002349 Tribolium castaneum TC002349 I 0.903
TRE_0000636201 Trichobilharzia regenti TRE_0000636201 I 0.855
TsM_000945000 Taenia solium TsM_000945000 I 0.842
tcf21 Xenopus tropicalis XB-GENE-484805 I 0.886
tcf21.L Xenopus laevis XB-GENE-484809 I 0.886
msc Xenopus tropicalis XB-GENE-978233 I 0.886