USF1 (Pan troglodytes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSPTRG00000001565 T036998_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.914 1.000
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.914 1.000
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.914 1.000
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.914 1.000
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.914 1.000
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.914 1.000
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.914 1.000
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.914 1.000
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.914 1.000
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.914 1.000
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.914 1.000
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.914 1.000
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.914 1.000
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.914 1.000
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.914 1.000
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000002628 bHLH 200 255

Links

Other bHLH family TFs
Other Pan troglodytes TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AACERI_AaceriAFL033W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFL033W I
AGOS_AFL033W Ashbya gossypii AGOS_AFL033W I
ANIA_01584 Aspergillus nidulans CADANIAG00008217 N
ATEG_06092 Aspergillus terreus CADATEAG00000839 N
COCC4DRAFT_157715 Bipolaris maydis COCC4DRAFT_157715 N
COCCADRAFT_34908 Bipolaris zeicola COCCADRAFT_34908 N
COCVIDRAFT_107313 Bipolaris victoriae COCVIDRAFT_107313 N
EURHEDRAFT_415639 Aspergillus ruber EURHEDRAFT_415639 N
F503_03308 Ophiostoma piceae uamh F503_03308 N
F503_08421 Ophiostoma piceae uamh F503_08421 I
FFUJ_11117 Fusarium fujikuroi FFUJ_11117 N
fgenesh1_pg.sca_28_chr13_5_0000057 Nectria haematococca fgenesh1_pg.sca_28_chr13_5_0000057 N
fgenesh1_pg.sca_32_chr11_3_0000153 Nectria haematococca fgenesh1_pg.sca_32_chr11_3_0000153 N
HMPREF1120_00198 Exophiala dermatitidis HMPREF1120_00198 N
HMPREF1120_05596 Exophiala dermatitidis HMPREF1120_05596 I
HMPREF1624_03990 Sporothrix schenckii HMPREF1624_03990 N
KAFR_0L02130 Kazachstania africana KAFR_0L02130 I
KLLA0_F10373g Kluyveromyces lactis KLLA0_F10373g I
KUCA_T00003114001 Kuraishia capsulata KUCA_T00003114001 N
KUCA_T00003117001 Kuraishia capsulata KUCA_T00003117001 N
KUCA_T00003984001 Kuraishia capsulata KUCA_T00003984001 N
KUCA_T00003996001 Kuraishia capsulata KUCA_T00003996001 N
KUCA_T00005495001 Kuraishia capsulata KUCA_T00005495001 N
LALA0_S01e00826g Lachancea lanzarotensis LALA0_S01e00826g I
LALA0_S13e03268g Lachancea lanzarotensis LALA0_S13e03268g I
MGG_14816 Magnaporthe oryzae MGG_14816 N
NDAI_0F02050 Naumovozyma dairenensis NDAI_0F02050 I
NechaG86758 Fusarium solani NechaG86758 N
NechaG88155 Fusarium solani NechaG88155 N
Pc13g03330 Penicillium chrysogenum Pc13g03330 N
PCH_Pc13g03330 Penicillium rubens PCH_Pc13g03330 N
PV11_03278 Exophiala sideris PV11_03278 N
SS1G_05808 Sclerotinia sclerotiorum SS1G_05808 N