Clock (Rattus norvegicus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSRNOG00000002175 T037165_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Clock
M01735_2.00 		Mus musculus
NNCAYRTGNN
NNCAYRTGNN		 PBM
Weirauch et al.(2014)
pTH5056 		0.914 1.000
CLOCK
M02789_2.00 		Homo sapiens
DACACGTGYH
DRCACGTGTH		 SELEX
Jolma et al.(2013)
CLOCK_1 		0.914 1.000
CLOCK
M04129_2.00 		Homo sapiens
NMCACGTGYN
NRCACGTGKN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX 		0.914 1.000
CLOCK
M08728_2.00 		Homo sapiens
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C 		0.914 1.000
Clock
M08760_2.00 		Mus musculus
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C 		0.914 1.000
Clock
M09473_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Clock_GSE39860 		0.914 1.000
CLOCK
M09849_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CLOCK_Q6 		0.914 1.000
CLOCK
M04130_2.00 		Homo sapiens
NRCRCRTGBH
DVCAYGYGYN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000002976 bHLH 35 85
ENSRNOP00000002981 bHLH 35 85
ENSRNOP00000074670 bHLH 35 85

Links

Other bHLH family TFs
Other Rattus norvegicus TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AARA001118 Anopheles arabiensis AARA001118 N
AATE005200 Anopheles atroparvus AATE005200 N
ACHR008953 Anopheles christyi ACHR008953 N
ACOM027781 Anopheles coluzzii ACOM027781 N
ALUE_0000523001 Ascaris lumbricoides ALUE_0000523001 N
AMAM012119 Anopheles maculatus AMAM012119 N
AMEC001472 Anopheles melas AMEC001472 N
AMEM006409 Anopheles merus AMEM006409 N
ANCCAN_02501 Ancylostoma caninum ANCCAN_02501 N
ANCCEY_04498 Ancylostoma ceylanicum ANCCEY_04498 N
ANCDUO_01800 Ancylostoma duodenale ANCDUO_01800 N
AQUA008305 Anopheles quadriannulatus AQUA008305 N
ASIM_0001023101 Anisakis simplex ASIM_0001023101 N
augustus_masked-nMf.1.1.scaf00776-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf00776-processed-gene-0.0 N
BGLB003107 Biomphalaria glabrata BGLB003107 N
Bm12962 Brugia malayi Bm12962 N
BTMF_0000819101 Brugia timori BTMF_0000819101 N
BXY_0681200 Bursaphelenchus xylophilus BXY_0681200 N
CapteG215623 Capitella teleta CapteG215623 N
CBG25174 Caenorhabditis briggsae CBG25174 N
CBN28364 Caenorhabditis brenneri CBN28364 N
CBN28537 Caenorhabditis brenneri CBN28537 N
CGI_10012805 Crassostrea gigas CGI_10012805 N
CGOC_0000560601 Cylicostephanus goldi CGOC_0000560601 N
CJA30884 Caenorhabditis japonica CJA30884 N
CJA40030 Caenorhabditis japonica CJA40030 N
CPIJ006385 Culex quinquefasciatus CPIJ006385 N
CPIJ018552 Culex quinquefasciatus CPIJ018552 N
CpipJ_CPIJ006385 Culex pipiens CpipJ_CPIJ006385 N
CpipJ_CPIJ018552 Culex pipiens CpipJ_CPIJ018552 N
D918_05751 Trichuris suis D918_05751 N
DICVIV_09521 Dictyocaulus viviparus DICVIV_09521 N
EEL_0000436501 Elaeophora elaphi EEL_0000436501 N
EFV52452 Trichinella spiralis EFV52452 N
GM26798 Drosophila sechellia FBgn0181651 N
Hba_16068 Heterorhabditis bacteriophora Hba_16068 N
HelroG184094 Helobdella robusta HelroG184094 N
HPBE_0001925501 Heligmosomoides bakeri HPBE_0001925501 N
HPLM_0001120601 Haemonchus placei HPLM_0001120601 N
L893_g14196 Steinernema glaseri L893_g14196 N
L898_g11712 Steinernema monticolum L898_g11712 N
LCUP009926 Lucilia cuprina LCUP009926 N
LOAG_18302 Loa loa LOAG_18302 N
MDOA007303 Musca domestica MDOA007303 N
MESCA003372 Megaselia scalaris MESCA003372 N
nAv.1.0.1.g03640 Acanthocheilonema viteae nAv.1.0.1.g03640 N
nDi.2.2.2.g01975 Dirofilaria immitis nDi.2.2.2.g01975 N
nLs.2.1.2.g02280 Litomosoides sigmodontis nLs.2.1.2.g02280 N
nOo.2.0.1.g06917 Onchocerca ochengi nOo.2.0.1.g06917 N
nOo.2.0.1.g07994 Onchocerca ochengi nOo.2.0.1.g07994 N
OFLC_0001322801 Onchocerca flexuosa OFLC_0001322801 N
PEQ_0000886501 Parascaris equorum PEQ_0000886501 N
PPA09748 Pristionchus pacificus PPA09748 N
RPRC014602 Rhodnius prolixus RPRC014602 N
scaffold58-EXSNAP2012.11 Pristionchus exspectatus scaffold58-EXSNAP2012.11 N
SVE_1689300 Strongyloides venezuelensis SVE_1689300 N
TCLT_0000816701 Thelazia callipaeda TCLT_0000816701 N
TCNE_0000027001 Toxocara canis TCNE_0000027001 N
TELCIR_13776 Teladorsagia circumcincta TELCIR_13776 N
TTRE_0000249801 Trichuris trichiura TTRE_0000249801 N
WBGene00237282 Onchocerca volvulus WBGene00237282 N
WUBG_04923 Wuchereria bancrofti WUBG_04923 N