TCF4 (Sorex araneus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSSARG00000001666 T037261_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.847 0.909
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.847 0.909
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.847 0.909
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.847 0.909
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.847 0.909
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.847 0.909
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.847 0.909
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.847 0.909
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.845 0.864
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.845 0.864
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.845 0.864
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.845 0.864
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.845 0.864
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.845 0.864
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.845 0.864
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.845 0.864
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.845 0.864
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.845 0.864
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.845 0.864
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.845 0.864
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.845 0.864
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.845 0.864
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.845 0.841
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.845 0.841
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.845 0.841
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSARP00000001519 bHLH 568 613

Links

Other bHLH family TFs
Other Sorex araneus TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
16040_YML099C Saccharomyces mikatae 16040_YML099C I 0.000
17710_YML099C Saccharomyces paradoxus 17710_YML099C I 0.000
18194_YML099C Saccharomyces bayanus 18194_YML099C I 0.000
AACERI_AaceriAAL175W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAL175W I 0.000
AGOS_AAL175W Ashbya gossypii AGOS_AAL175W I 0.000
CaO19.2748 Candida albicans CaO19.2748 I 0.000
CD36_42420 Candida dubliniensis CD36_42420 I 0.000
CORT_0E00270 Candida orthopsilosis CORT_0E00270 I 0.000
CPAG_00315 Candida parapsilosis CPAG_00315 I 0.000
CTRG_00138 Candida tropicalis CTRG_00138 I 0.000
DEHA2E16302g Debaryomyces hansenii DEHA2E16302g I 0.000
Ecym_8159 Eremothecium cymbalariae Ecym_8159 I 0.000
e_gww1.1.1.1491.1 Pichia stipitis e_gww1.1.1.1491.1 I 0.000
G210_1017 Candida maltosa G210_1017 I 0.000
KLLA0_D10197g Kluyveromyces lactis KLLA0_D10197g I 0.000
KLTH0E16500g Kluyveromyces thermotolerans KLTH0E16500g I 0.000
KLTH0E16500g Lachancea thermotolerans KLTH0E16500g I 0.000
KNAG_0J00210 Kazachstania naganishii KNAG_0J00210 I 0.000
Kpol_538p52 Vanderwaltozyma polyspora Kpol_538p52 I 0.000
Kwal_9688 Kluyveromyces waltii Kwal_9688 I 0.000
LELG_04177 Lodderomyces elongisporus LELG_04177 I 0.000
NCAS_0C00220 Naumovozyma castellii NCAS_0C00220 I 0.000
PGUG_00229 Candida guilliermondii PGUG_00229 N 0.000
PGUG_00229 Meyerozyma guilliermondii PGUG_00229 N 0.000
PICST_51603 Scheffersomyces stipitis PICST_51603 I 0.000
Scas_Contig626.6 Saccharomyces castellii Scas_Contig626.6 I 0.000
SKUD_195006 Saccharomyces kudriavzevii SKUD_195006 I 0.000
SPAPADRAFT_69629 Spathaspora passalidarum SPAPADRAFT_69629 I 0.000
SU7_2431 Saccharomyces arboricola SU7_2431 I 0.000
TDEL_0B00480 Torulaspora delbrueckii TDEL_0B00480 I 0.000
TPHA_0C04980 Tetrapisispora phaffii TPHA_0C04980 N 0.000
TRIATDRAFT_141953 Trichoderma atroviride TRIATDRAFT_141953 I 0.000
ARG81 Saccharomyces cerevisiae YML099C D 0.000
ZBAI_03002 Zygosaccharomyces bailii ZBAI_03002 I 0.000
ZBAI_08687 Zygosaccharomyces bailii ZBAI_08687 I 0.000
ZYRO0A00440g Zygosaccharomyces rouxii ZYRO0A00440g I 0.000