Alligator_sinensis_CCG001917.1 (Alligator sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Alligator_sinensis_CCG001917.1 T046625_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf21
M01746_2.00 		Mus musculus
RMCAKMTGK
MCAKMTGKY		 PBM
Weirauch et al.(2014)
pTH5087 		0.914 1.000
Tcf21
M02819_2.00 		Mus musculus
VNAACAGCTGTTVN
NBAACAGCTGTTNB		 SELEX
Jolma et al.(2013)
Tcf21_1 		0.914 1.000
TCF21
M04092_2.00 		Homo sapiens
BAACAGCTGBYN
NRVCAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_1 		0.914 1.000
TCF21
M04093_2.00 		Homo sapiens
NRCCATATGKYV
BRMCATATGGYN		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_2 		0.914 1.000
TCF21
M04094_2.00 		Homo sapiens
BAACAGCTGTYV
BRACAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_1 		0.914 1.000
TCF21
M04095_2.00 		Homo sapiens
BACCATATGKYV
BRMCATATGGTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_2 		0.914 1.000
Msc
M01730_2.00 		Mus musculus
NVCRKMYGBN
NVCRKMYGBN		 PBM
Weirauch et al.(2014)
pTH5112 		0.914 0.981
MSC
M02801_2.00 		Homo sapiens
AACAGCTGTT
AACAGCTGTT		 SELEX
Jolma et al.(2013)
MSC_1 		0.914 0.981
MSC
M04183_2.00 		Homo sapiens
NRMCAGMTGBYN
NRVCAKCTGKYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_1 		0.914 0.981
MSC
M04184_2.00 		Homo sapiens
NRVCAYVTGBYN
NRVCABRTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_2 		0.914 0.981
MSC
M04187_2.00 		Homo sapiens
NRMCAGCTGBYV
BRVCAGCTGKYN		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_1 		0.914 0.981
MSC
M04188_2.00 		Homo sapiens
BRMCATATGKYN
NRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_2 		0.914 0.981
MSC
M04185_2.00 		Homo sapiens
NRVCAGCTGBBN
NVVCAGCTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_1 		0.914 0.981
MSC
M04186_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_2 		0.914 0.981
MSC
M04189_2.00 		Homo sapiens
BRACAGCTGTYV
BRACAGCTGTYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_1 		0.914 0.981
MSC
M04190_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_2 		0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001917.1 bHLH 80 132

Links

Other bHLH family TFs
Other Alligator sinensis TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL010031 Aedes aegypti AAEL010031 I 0.849
AALB007560 Anopheles albimanus AALB007560 I 0.849
AALB007822 Anopheles albimanus AALB007822 I 0.849
Aan_R009769 Calypte anna Aan_R009769 I 0.914
AARA007787 Anopheles arabiensis AARA007787 I 0.849
AATE012411 Anopheles atroparvus AATE012411 I 0.849
ACEP13483 Atta cephalotes ACEP13483 I 0.840
ACHR000018 Anopheles christyi ACHR000018 I 0.849
ACOM025280 Anopheles coluzzii ACOM025280 I 0.849
ACUA017871 Anopheles culicifacies ACUA017871 I 0.849
ACYPI002601 Acyrthosiphon pisum ACYPI002601 I 0.851
ADIR008037 Anopheles dirus ADIR008037 I 0.849
AEPI000467 Anopheles epiroticus AEPI000467 I 0.849
Afo_R014913 Aptenodytes forsteri Afo_R014913 I 0.914
AFUN008043 Anopheles funestus AFUN008043 I 0.849
AGAP007124 Anopheles gambiae AGAP007124 I 0.849
AMAM016192 Anopheles maculatus AMAM016192 I 0.849
AMEC000644 Anopheles melas AMEC000644 I 0.849
AMEM011707 Anopheles merus AMEM011707 I 0.849
AMIN011264 Anopheles minimus AMIN011264 I 0.849
AQUA002051 Anopheles quadriannulatus AQUA002051 I 0.849
ASTEI06898 Anopheles stephensi ASTEI06898 I 0.849
A_02746 Schistosoma haematobium A_02746 I 0.855
BGIBMGA012033 Bombyx mori BGIBMGA012033 I 0.875
BGLB011346 Biomphalaria glabrata BGLB011346 I 0.890
Brh_R005605 Buceros rhinoceros Brh_R005605 I 0.914
CapteG80741 Capitella teleta CapteG80741 I 0.886
Cflo_04912--XP_001121050.1_APIME Camponotus floridanus Cflo_04912--XP_001121050.1_APIME I 0.886
CGI_10026944 Crassostrea gigas CGI_10026944 I 0.886
CLEC012607 Cimex lectularius CLEC012607 I 0.855
CPIJ016930 Culex quinquefasciatus CPIJ016930 I 0.849
CpipJ_CPIJ016930 Culex pipiens CpipJ_CPIJ016930 I 0.849
csin111822 Clonorchis sinensis csin111822 I 0.855
D915_08809 Fasciola hepatica D915_08809 I 0.855
DAPPUDRAFT_37461 Daphnia pulex DAPPUDRAFT_37461 I 0.855
ECANG7_04949 Echinococcus canadensis ECANG7_04949 I 0.842
EmuJ_000624300 Echinococcus multilocularis EmuJ_000624300 I 0.842
TCF21 Anolis carolinensis ENSACAG00000010325 I 0.914
MSC Anolis carolinensis ENSACAG00000014585 I 0.914
ENSAMEG00000005942 Ailuropoda melanoleuca ENSAMEG00000005942 I 0.914
ENSAMEG00000015953 Ailuropoda melanoleuca ENSAMEG00000015953 I 0.914
ENSAMXG00000000487 Astyanax mexicanus ENSAMXG00000000487 I 0.883
ENSAMXG00000004351 Astyanax mexicanus ENSAMXG00000004351 I 0.875
ENSAPLG00000008024 Anas platyrhynchos ENSAPLG00000008024 I 0.914
MSC Bos taurus ENSBTAG00000005404 I 0.914
TCF21 Bos taurus ENSBTAG00000021827 I 0.914
ENSBTAP00000044112-D1 Bos grunniens ENSBTAP00000044112-D1 I 0.914
ENSBTAP00000052463-D1 Bos grunniens ENSBTAP00000052463-D1 I 0.914
TCF21 Canis familiaris ENSCAFG00000000205 I 0.914
MSC Canis familiaris ENSCAFG00000007923 I 0.914
TCF21 Callithrix jacchus ENSCJAG00000002811 I 0.914
MSC Callithrix jacchus ENSCJAG00000007766 I 0.914
ENSCPOG00000004726 Cavia porcellus ENSCPOG00000004726 I 0.914
TCF21 Cavia porcellus ENSCPOG00000024201 I 0.914
ENSCSAG00000013709 Chlorocebus sabaeus ENSCSAG00000013709 I 0.914
ENSCSAG00000016705 Chlorocebus sabaeus ENSCSAG00000016705 I 0.914
tcf21 Danio rerio ENSDARG00000036869 I 0.914
msc Danio rerio ENSDARG00000045353 I 0.886
MSC Dasypus novemcinctus ENSDNOG00000019019 I 0.914
TCF21 Dasypus novemcinctus ENSDNOG00000042846 I 0.914
MSC Equus caballus ENSECAG00000008333 I 0.914
TCF21 Equus caballus ENSECAG00000019197 I 0.914
MSC Erinaceus europaeus ENSEEUG00000005021 I 0.914
TCF21 Echinops telfairi ENSETEG00000012492 I 0.914
ENSFALG00000008455 Ficedula albicollis ENSFALG00000008455 I 0.914
ENSFALG00000011861 Ficedula albicollis ENSFALG00000011861 I 0.914
TCF21 Felis catus ENSFCAG00000031261 I 0.914
TCF21 Homo sapiens ENSG00000118526 D 0.914
MSC Homo sapiens ENSG00000178860 D 0.914
msc Gasterosteus aculeatus ENSGACG00000002802 I 0.886
tcf21 Gasterosteus aculeatus ENSGACG00000010957 I 0.886
ENSGALG00000019470 Gallus gallus ENSGALG00000019470 I 0.914
TCF21 Gallus gallus ENSGALG00000029024 I 0.914
TCF21 Gorilla gorilla ENSGGOG00000005460 I 0.914
MSC Gorilla gorilla ENSGGOG00000009955 I 0.914
ENSGMOG00000019481 Gadus morhua ENSGMOG00000019481 I 0.886
ENSLACG00000005024 Latimeria chalumnae ENSLACG00000005024 I 0.914
ENSLACG00000014348 Latimeria chalumnae ENSLACG00000014348 I 0.894
MSC Loxodonta africana ENSLAFG00000002649 I 0.914
TCF21 Loxodonta africana ENSLAFG00000009507 I 0.914
ENSLOCG00000003912 Lepisosteus oculatus ENSLOCG00000003912 I 0.914
ENSLOCG00000016232 Lepisosteus oculatus ENSLOCG00000016232 I 0.914
ENSMEUG00000005491 Macropus eugenii ENSMEUG00000005491 I 0.914
TCF21 Meleagris gallopavo ENSMGAG00000013117 I 0.914
ENSMICG00000014144 Microcebus murinus ENSMICG00000014144 I 0.914
MSC Myotis lucifugus ENSMLUG00000008572 I 0.914
TCF21 Myotis lucifugus ENSMLUG00000009194 I 0.914
MSC Macaca mulatta ENSMMUG00000000947 I 0.914
TCF21 Macaca mulatta ENSMMUG00000002871 I 0.914
MSC Monodelphis domestica ENSMODG00000007225 I 0.914
TCF21 Monodelphis domestica ENSMODG00000017516 I 0.914
ENSMPUG00000010593 Mustela putorius furo ENSMPUG00000010593 I 0.914
ENSMPUG00000014798 Mustela putorius furo ENSMPUG00000014798 I 0.914
Msc Mus musculus ENSMUSG00000025930 D 0.914
Tcf21 Mus musculus ENSMUSG00000045680 D 0.914
ENSNLEG00000011452 Nomascus leucogenys ENSNLEG00000011452 I 0.914
ENSNLEG00000014647 Nomascus leucogenys ENSNLEG00000014647 I 0.914
TCF21 Ornithorhynchus anatinus ENSOANG00000013098 I 0.914
ENSOARG00000004844 Ovis aries ENSOARG00000004844 I 0.914
ENSOARG00000014623 Ovis aries ENSOARG00000014623 I 0.914
MSC Oryctolagus cuniculus ENSOCUG00000007208 I 0.914
TCF21 Oryctolagus cuniculus ENSOCUG00000017761 I 0.914
MSC Otolemur garnettii ENSOGAG00000013827 I 0.914
TCF21 Otolemur garnettii ENSOGAG00000034073 I 0.914
ENSONIG00000000446 Oreochromis niloticus ENSONIG00000000446 I 0.914
ENSONIG00000014278 Oreochromis niloticus ENSONIG00000014278 I 0.886
msc Oryzias latipes ENSORLG00000008030 I 0.886
tcf21 Oryzias latipes ENSORLG00000016491 I 0.914
ENSP00000321445 Macaca fascicularis ENSP00000321445 I 0.914
ENSP00000356857 Macaca fascicularis ENSP00000356857 I 0.914
ENSPANG00000022301 Papio anubis ENSPANG00000022301 I 0.914
ENSPANG00000024238 Papio anubis ENSPANG00000024238 I 0.914
MSC Procavia capensis ENSPCAG00000004330 I 0.914
ENSPCAG00000006459 Procavia capensis ENSPCAG00000006459 I 0.914
ENSPFOG00000010821 Poecilia formosa ENSPFOG00000010821 I 0.914
ENSPFOG00000020725 Poecilia formosa ENSPFOG00000020725 I 0.886
ENSPMAG00000000379 Petromyzon marinus ENSPMAG00000000379 I 0.886
ENSPPYG00000017022 Pongo abelii ENSPPYG00000017022 I 0.914
ENSPPYG00000018665 Pongo abelii ENSPPYG00000018665 I 0.914
ENSPSIG00000003604 Pelodiscus sinensis ENSPSIG00000003604 I 0.914
TCF21 Pan troglodytes ENSPTRG00000018622 I 0.914
MSC Pan troglodytes ENSPTRG00000020339 I 0.914
MSC Pteropus vampyrus ENSPVAG00000009083 I 0.914
TCF21 Pteropus vampyrus ENSPVAG00000009085 I 0.914
Msc Rattus norvegicus ENSRNOG00000007540 I 0.914
Tcf21 Rattus norvegicus ENSRNOG00000016700 I 0.914
ENSSHAG00000002801 Sarcophilus harrisii ENSSHAG00000002801 I 0.914
ENSSHAG00000004870 Sarcophilus harrisii ENSSHAG00000004870 I 0.914
ENSSSCG00000004174 Sus scrofa ENSSSCG00000004174 I 0.914
MSC Sus scrofa ENSSSCG00000006187 I 0.914
ENSSTOG00000023733 Ictidomys tridecemlineatus ENSSTOG00000023733 I 0.914
ENSSTOG00000024832 Ictidomys tridecemlineatus ENSSTOG00000024832 I 0.914
MSC Tupaia belangeri ENSTBEG00000014659 I 0.914
MSC Taeniopygia guttata ENSTGUG00000011502 I 0.914
TCF21 Taeniopygia guttata ENSTGUG00000011548 I 0.914
msc Tetraodon nigroviridis ENSTNIG00000008188 I 0.886
tcf21 Tetraodon nigroviridis ENSTNIG00000016326 I 0.914
tcf21 Takifugu rubripes ENSTRUG00000003919 I 0.914
msc Takifugu rubripes ENSTRUG00000012425 I 0.886
TCF21 Tursiops truncatus ENSTTRG00000009645 I 0.914
MSC Tursiops truncatus ENSTTRG00000017260 I 0.914
MSC Vicugna pacos ENSVPAG00000000378 I 0.914
TCF21 Vicugna pacos ENSVPAG00000006271 I 0.914
ENSXMAG00000004322 Xiphophorus maculatus ENSXMAG00000004322 I 0.914
ENSXMAG00000010332 Xiphophorus maculatus ENSXMAG00000010332 I 0.886
fgenesh2_pg.scaffold_201000026 Branchiostoma floridae fgenesh2_pg.scaffold_201000026 I 0.871
fgenesh2_pg.scaffold_201000027 Branchiostoma floridae fgenesh2_pg.scaffold_201000027 I 0.871
fgenesh2_pg.scaffold_201000028 Branchiostoma floridae fgenesh2_pg.scaffold_201000028 I 0.862
fgenesh2_pg.scaffold_201000029 Branchiostoma floridae fgenesh2_pg.scaffold_201000029 I 0.867
GB42177 Apis mellifera GB42177 I 0.875
Gfo_R006439 Geospiza fortis Gfo_R006439 I 0.914
gw.912.11.1 Branchiostoma floridae gw.912.11.1 I 0.862
HelroG188977 Helobdella robusta HelroG188977 I 0.870
HHAL000695-PA Halyomorpha halys HHAL000695-PA I 0.883
Hsal_01862--XP_001122645.1_APIME Harpegnathos saltator Hsal_01862--XP_001122645.1_APIME I 0.875
ISCW019706 Ixodes scapularis ISCW019706 I 0.851
KGM_20305 Danaus plexippus KGM_20305 I 0.875
L798_06836 Zootermopsis nevadensis L798_06836 I 0.875
LDEC005027 Leptinotarsa decemlineata LDEC005027 I 0.875
LLOJ001927 Lutzomyia longipalpis LLOJ001927 I 0.859
LotgiG99224 Lottia gigantea LotgiG99224 I 0.862
MCOS_0000023201 Mesocestoides corti MCOS_0000023201 I 0.842
Myotis_brandtii_TCF21_10035690 Myotis brandtii Myotis_brandtii_TCF21_10035690 I 0.914
Ogr02938 Ophisaurus gracilis Ogr02938 I 0.914
PHUM294350 Pediculus humanus PHUM294350 I 0.840
PPAI008462 Phlebotomus papatasi PPAI008462 I 0.859
RPRC001590 Rhodnius prolixus RPRC001590 I 0.883
Sakowv30031408m.g Saccoglossus kowalevskii Sakowv30031408m.g I 0.851
SCUD_0001558401 Schistosoma curassoni SCUD_0001558401 I 0.855
SINV12414 Solenopsis invicta SINV12414 I 0.840
Sjc_0073180 Schistosoma japonicum Sjc_0073180 I 0.855
SMAR006929 Strigamia maritima SMAR006929 I 0.875
Smp_022610 Schistosoma mansoni Smp_022610 I 0.855
SMRZ_0001749101 Schistosoma margrebowiei SMRZ_0001749101 I 0.855
SMTD_0000660301 Schistosoma mattheei SMTD_0000660301 I 0.855
SPU_012008 Strongylocentrotus purpuratus SPU_012008 I 0.890
T265_00953 Opisthorchis viverrini T265_00953 I 0.855
TASK_0000025401 Taenia asiatica TASK_0000025401 I 0.842
TC002349 Tribolium castaneum TC002349 I 0.875
TRE_0000636201 Trichobilharzia regenti TRE_0000636201 I 0.855
TsM_000945000 Taenia solium TsM_000945000 I 0.842
tcf21 Xenopus tropicalis XB-GENE-484805 I 0.914
tcf21.L Xenopus laevis XB-GENE-484809 I 0.914
msc Xenopus tropicalis XB-GENE-978233 I 0.914