Alligator_sinensis_CCG011163.1 (Alligator sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Alligator_sinensis_CCG011163.1 T046653_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nhlh2
M00756_2.00 		Mus musculus
NKCAGCTGHN
NDCAGCTGMN		 PBM
Weirauch et al.(2013)
pTH3037 		0.914 1.000
NHLH2
M04177_2.00 		Homo sapiens
DDGNMGCAGCTGCGYCMH
DKGRCGCAGCTGCKNCHH		 SELEX
Yin et al.(2017)
NHLH2_FL_HT-SELEX 		0.914 1.000
NHLH2
M09878_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEN2_Q2 		0.914 1.000
NHLH2
M04178_2.00 		Homo sapiens
DGGNMBCAGCTGCGYCCH
DGGRCGCAGCTGVKNCCH		 SELEX
Yin et al.(2017)
NHLH2_FL_Methyl-HT-SELEX 		0.914 1.000
NHLH1
M02796_2.00 		Homo sapiens
CGCAGCTGCB
VGCAGCTGCG		 SELEX
Jolma et al.(2013)
NHLH1_1 		0.914 0.981
NHLH1
M02797_2.00 		Homo sapiens
VGCAGCTGCK
MGCAGCTGCB		 SELEX
Jolma et al.(2013)
NHLH1_2 		0.914 0.981
NHLH1
M04162_2.00 		Homo sapiens
NDGNMKCAGCTGCGYCMH
DKGRCGCAGCTGMKNCHN		 SELEX
Yin et al.(2017)
NHLH1_eDBD_HT-SELEX 		0.914 0.981
NHLH1
M04164_2.00 		Homo sapiens
NDGNMKCAGCTGCGYCMH
DKGRCGCAGCTGMKNCHN		 SELEX
Yin et al.(2017)
NHLH1_FL_HT-SELEX 		0.914 0.981
Nhlh1
M08773_2.00 		Mus musculus
BKGGNMNCAGCTGCGBCCYY
RRGGVCGCAGCTGNKNCCMV		 Misc
Kulakovskiy et al.(2013)
HEN1_MOUSE.H11MO.0.C 		0.914 0.981
NHLH1
M09875_2.00 		Homo sapiens
NNDGGNMVCAGCTGVGNCCNNN
NNNGGNCBCAGCTGBKNCCHNN		 Transfac
Matys et al.(2006)
V$HEN1_01 		0.914 0.981
NHLH1
M09876_2.00 		Homo sapiens
NDRGGVMGCAGCTGMKNCCHHN
NDDGGNMKCAGCTGCKBCCYHN		 Transfac
Matys et al.(2006)
V$HEN1_02 		0.914 0.981
NHLH1
M04163_2.00 		Homo sapiens
NRGBMKCAGCTGCGYCCH
DGGRCGCAGCTGMKVCYN		 SELEX
Yin et al.(2017)
NHLH1_eDBD_Methyl-HT-SELEX 		0.914 0.981
NHLH1
M04165_2.00 		Homo sapiens
DGGNMBCAGCTGCGYCCH
DGGRCGCAGCTGVKNCCH		 SELEX
Yin et al.(2017)
NHLH1_FL_Methyl-HT-SELEX 		0.914 0.981
HLH4C
M03609_2.00 		Drosophila melanogaster
DDNCRCAGCTGYGNHH
DDNCRCAGCTGYGNHH		 SELEX
Nitta et al.(2015)
HLH4C_1 		0.891 0.904
HLH4C
M03610_2.00 		Drosophila melanogaster
DRSMYCAGCTGVKSYH
DRSMBCAGCTGRKSYH		 SELEX
Nitta et al.(2015)
HLH4C_2 		0.891 0.904
HLH4C
M03611_2.00 		Drosophila melanogaster
NRBMYCAGCTGYGNHH
DDNCRCAGCTGRKVYN		 SELEX
Nitta et al.(2015)
HLH4C_3 		0.891 0.904
HLH4C
M05963_2.00 		Drosophila melanogaster
CACCTGMDCC
GGHKCAGGTG		 B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_3_FBgn0011277 		0.891 0.904
HLH4C
M05964_2.00 		Drosophila melanogaster
MCAYCTGMGMMM
KKKCKCAGRTGK		 B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_4_FBgn0011277 		0.891 0.904
HLH4C
M05965_2.00 		Drosophila melanogaster
VNHHVCACCTGMBNC
GNVKCAGGTGBDDNB		 B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_FBgn0011277 		0.891 0.904
HLH4C
M05966_2.00 		Drosophila melanogaster
RGSMYCAGCTGCGYY
RRCGCAGCTGRKSCY		 B1H
Zhu et al.(2011)
HLH4C_SANGER_5_FBgn0011277 		0.891 0.904
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG011163.1 bHLH 34 86

Links

Other bHLH family TFs
Other Alligator sinensis TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O9_10773 Exophiala aquamarina A1O9_10773 I
BBA_08083 Beauveria bassiana BBA_08083 I
CCM_01116 Cordyceps militaris CCM_01116 I
CFIO01_07294 Colletotrichum fioriniae CFIO01_07294 N
CGGC5_8357 Colletotrichum gloeosporioides CGGC5_8357 I
CH063_06329 Colletotrichum higginsianum CH063_06329 I
Cob_01730 Colletotrichum orbiculare Cob_01730 N
CPUR_03208 Claviceps purpurea CPUR_03208 I
CSUB01_10562 Colletotrichum sublineola CSUB01_10562 N
estExt_fgenesh1_kg.C_40256 Cryphonectria parasitica estExt_fgenesh1_kg.C_40256 N
F503_06966 Ophiostoma piceae uamh F503_06966 N
FFUJ_01501 Fusarium fujikuroi FFUJ_01501 I
FGRRES_01307 Fusarium graminearum FGRRES_01307 I
FOXG_00080 Fusarium oxysporum FOXG_00080 I
FPSE_01403 Fusarium pseudograminearum FPSE_01403 I
FVEG_01436 Fusarium verticillioides FVEG_01436 I
GGTG_01326 Gaeumannomyces graminis GGTG_01326 N
GLRG_03872 Colletotrichum graminicola GLRG_03872 N
HMPREF1541_08750 Cyphellophora europaea HMPREF1541_08750 N
HMPREF1624_02502 Sporothrix schenckii HMPREF1624_02502 N
LEMA_P050050.1 Leptosphaeria maculans LEMA_P050050.1 I
MAM_03651 Metarhizium album MAM_03651 I
MAPG_06566 Magnaporthe poae MAPG_06566 N
MYCTH_2088766 Myceliophthora thermophila MYCTH_2088766 N
OCS_06442 Ophiocordyceps sinensis OCS_06442 I
PV06_10058 Exophiala oligosperma PV06_10058 I
PV09_02314 Verruconis gallopava PV09_02314 N
PV10_08565 Exophiala mesophila PV10_08565 N
SNOG_15057 Phaeosphaeria nodorum SNOG_15057 I
SNOG_15057 Stagonospora nodorum SNOG_15057 I
SPBR_02720 Sporothrix brasiliensis SPBR_02720 N
TRIATDRAFT_148632 Trichoderma atroviride TRIATDRAFT_148632 I
TRIREDRAFT_58130 Trichoderma reesei TRIREDRAFT_58130 I
TRIVIDRAFT_173998 Trichoderma virens TRIVIDRAFT_173998 I
UCREL1_1818 Eutypa lata UCREL1_1818 I
UCRPA7_7634 Togninia minima UCRPA7_7634 N
VDAG_08823 Verticillium dahliae VDAG_08823 N
VDBG_05122 Verticillium albo atrum VDBG_05122 N
VHEMI02386 Torrubiella hemipterigena VHEMI02386 I
W97_00703 Coniosporium apollinis W97_00703 I