Gfo_R014815 (Geospiza fortis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gfo_R014815 T047357_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HLH4C
M03609_2.00 		Drosophila melanogaster
DDNCRCAGCTGYGNHH
DDNCRCAGCTGYGNHH		 SELEX
Nitta et al.(2015)
HLH4C_1 		0.911 0.923
HLH4C
M03610_2.00 		Drosophila melanogaster
DRSMYCAGCTGVKSYH
DRSMBCAGCTGRKSYH		 SELEX
Nitta et al.(2015)
HLH4C_2 		0.911 0.923
HLH4C
M03611_2.00 		Drosophila melanogaster
NRBMYCAGCTGYGNHH
DDNCRCAGCTGRKVYN		 SELEX
Nitta et al.(2015)
HLH4C_3 		0.911 0.923
HLH4C
M05963_2.00 		Drosophila melanogaster
CACCTGMDCC
GGHKCAGGTG		 B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_3_FBgn0011277 		0.911 0.923
HLH4C
M05964_2.00 		Drosophila melanogaster
MCAYCTGMGMMM
KKKCKCAGRTGK		 B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_4_FBgn0011277 		0.911 0.923
HLH4C
M05965_2.00 		Drosophila melanogaster
VNHHVCACCTGMBNC
GNVKCAGGTGBDDNB		 B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_FBgn0011277 		0.911 0.923
HLH4C
M05966_2.00 		Drosophila melanogaster
RGSMYCAGCTGCGYY
RRCGCAGCTGRKSCY		 B1H
Zhu et al.(2011)
HLH4C_SANGER_5_FBgn0011277 		0.911 0.923
NHLH1
M02796_2.00 		Homo sapiens
CGCAGCTGCB
VGCAGCTGCG		 SELEX
Jolma et al.(2013)
NHLH1_1 		0.894 0.962
NHLH1
M02797_2.00 		Homo sapiens
VGCAGCTGCK
MGCAGCTGCB		 SELEX
Jolma et al.(2013)
NHLH1_2 		0.894 0.962
NHLH1
M04162_2.00 		Homo sapiens
NDGNMKCAGCTGCGYCMH
DKGRCGCAGCTGMKNCHN		 SELEX
Yin et al.(2017)
NHLH1_eDBD_HT-SELEX 		0.894 0.962
NHLH1
M04164_2.00 		Homo sapiens
NDGNMKCAGCTGCGYCMH
DKGRCGCAGCTGMKNCHN		 SELEX
Yin et al.(2017)
NHLH1_FL_HT-SELEX 		0.894 0.962
Nhlh1
M08773_2.00 		Mus musculus
BKGGNMNCAGCTGCGBCCYY
RRGGVCGCAGCTGNKNCCMV		 Misc
Kulakovskiy et al.(2013)
HEN1_MOUSE.H11MO.0.C 		0.894 0.962
NHLH1
M09875_2.00 		Homo sapiens
NNDGGNMVCAGCTGVGNCCNNN
NNNGGNCBCAGCTGBKNCCHNN		 Transfac
Matys et al.(2006)
V$HEN1_01 		0.894 0.962
NHLH1
M09876_2.00 		Homo sapiens
NDRGGVMGCAGCTGMKNCCHHN
NDDGGNMKCAGCTGCKBCCYHN		 Transfac
Matys et al.(2006)
V$HEN1_02 		0.894 0.962
NHLH1
M04163_2.00 		Homo sapiens
NRGBMKCAGCTGCGYCCH
DGGRCGCAGCTGMKVCYN		 SELEX
Yin et al.(2017)
NHLH1_eDBD_Methyl-HT-SELEX 		0.894 0.962
NHLH1
M04165_2.00 		Homo sapiens
DGGNMBCAGCTGCGYCCH
DGGRCGCAGCTGVKNCCH		 SELEX
Yin et al.(2017)
NHLH1_FL_Methyl-HT-SELEX 		0.894 0.962
Nhlh2
M00756_2.00 		Mus musculus
NKCAGCTGHN
NDCAGCTGMN		 PBM
Weirauch et al.(2013)
pTH3037 		0.894 0.942
NHLH2
M04177_2.00 		Homo sapiens
DDGNMGCAGCTGCGYCMH
DKGRCGCAGCTGCKNCHH		 SELEX
Yin et al.(2017)
NHLH2_FL_HT-SELEX 		0.894 0.942
NHLH2
M09878_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEN2_Q2 		0.894 0.942
NHLH2
M04178_2.00 		Homo sapiens
DGGNMBCAGCTGCGYCCH
DGGRCGCAGCTGVKNCCH		 SELEX
Yin et al.(2017)
NHLH2_FL_Methyl-HT-SELEX 		0.894 0.942
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R014815 bHLH 14 66

Links

Other bHLH family TFs
Other Geospiza fortis TFs

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