Pavir.Ba00676 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Ba00676 T050673_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42280
M06733_2.00 		Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH130_col_a 		0.867 0.961
BHLH122
M06724_2.00 		Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN		 Dap-seq
OMalley et al.(2016)
bHLH122_col100_a 		0.844 0.902
BHLH122
M06725_2.00 		Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a 		0.844 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba00676.1.p bHLH 304 354
Pavir.Ba00676.2.p bHLH 303 353

Links

Other bHLH family TFs
Other Panicum virgatum TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG001228.1 Alligator sinensis Alligator_sinensis_CCG001228.1 N
CGI_10026943 Crassostrea gigas CGI_10026943 N
Cmyd_10002847 Chelonia mydas Cmyd_10002847 N
TCF24 Anolis carolinensis ENSACAG00000016461 N
ENSAMEG00000001827 Ailuropoda melanoleuca ENSAMEG00000001827 N
ENSAMEG00000012533 Ailuropoda melanoleuca ENSAMEG00000012533 N
ENSAMXG00000005025 Astyanax mexicanus ENSAMXG00000005025 N
ENSAMXG00000013680 Astyanax mexicanus ENSAMXG00000013680 N
TCF24 Canis familiaris ENSCAFG00000029615 N
TCF23 Canis familiaris ENSCAFG00000030192 N
TCF23 Choloepus hoffmanni ENSCHOG00000004803 N
TCF23 Callithrix jacchus ENSCJAG00000001198 N
ENSCPOG00000003785 Cavia porcellus ENSCPOG00000003785 N
TCF24 Cavia porcellus ENSCPOG00000014534 N
ENSCSAG00000009631 Chlorocebus sabaeus ENSCSAG00000009631 N
ENSCSAG00000014111 Chlorocebus sabaeus ENSCSAG00000014111 N
TCF24 Danio rerio ENSDARG00000086944 N
tcf23 Danio rerio ENSDARG00000087381 N
ENSDNOG00000030981 Dasypus novemcinctus ENSDNOG00000030981 N
TCF24 Dasypus novemcinctus ENSDNOG00000045736 N
Tcf23 Dipodomys ordii ENSDORG00000014403 N
TCF23 Equus caballus ENSECAG00000021374 N
TCF23 Erinaceus europaeus ENSEEUG00000007250 N
TCF23 Felis catus ENSFCAG00000022795 N
TCF23 Homo sapiens ENSG00000163792 N
TCF24 Homo sapiens ENSG00000261787 N
ENSGACG00000002911 Gasterosteus aculeatus ENSGACG00000002911 N
TCF23 Gorilla gorilla ENSGGOG00000002612 N
TCF24 Gorilla gorilla ENSGGOG00000027653 N
ENSLACG00000004204 Latimeria chalumnae ENSLACG00000004204 N
ENSLACG00000014458 Latimeria chalumnae ENSLACG00000014458 N
TCF23 Loxodonta africana ENSLAFG00000014587 N
ENSLOCG00000004611 Lepisosteus oculatus ENSLOCG00000004611 N
ENSLOCG00000015901 Lepisosteus oculatus ENSLOCG00000015901 N
ENSMEUG00000010665 Macropus eugenii ENSMEUG00000010665 N
TCF23 Microcebus murinus ENSMICG00000017064 N
TCF23 Macaca mulatta ENSMMUG00000015867 N
TCF23 Monodelphis domestica ENSMODG00000015714 N
ENSMODG00000024958 Monodelphis domestica ENSMODG00000024958 N
Tcf23 Mus musculus ENSMUSG00000006642 N
Tcf24 Mus musculus ENSMUSG00000099032 N
ENSNLEG00000003009 Nomascus leucogenys ENSNLEG00000003009 N
ENSNLEG00000010898 Nomascus leucogenys ENSNLEG00000010898 N
TCF24 Ornithorhynchus anatinus ENSOANG00000002317 N
TCF23 Ornithorhynchus anatinus ENSOANG00000003936 N
ENSOARG00000000076 Ovis aries ENSOARG00000000076 N
ENSOARG00000019168 Ovis aries ENSOARG00000019168 N
ENSOCUG00000008655 Oryctolagus cuniculus ENSOCUG00000008655 N
TCF23 Otolemur garnettii ENSOGAG00000006528 N
ENSONIG00000011423 Oreochromis niloticus ENSONIG00000011423 N
ENSOPRG00000010556 Ochotona princeps ENSOPRG00000010556 N
ENSP00000296096 Macaca fascicularis ENSP00000296096 N
ENSP00000296096-D1 Bos grunniens ENSP00000296096-D1 N
ENSPANG00000009856 Papio anubis ENSPANG00000009856 N
ENSPANG00000017721 Papio anubis ENSPANG00000017721 N
ENSPFOG00000004192 Poecilia formosa ENSPFOG00000004192 N
ENSPPYG00000012560 Pongo abelii ENSPPYG00000012560 N
ENSPSIG00000014305 Pelodiscus sinensis ENSPSIG00000014305 N
TCF23 Pan troglodytes ENSPTRG00000011753 N
ENSPVAG00000015152 Pteropus vampyrus ENSPVAG00000015152 N
Tcf23 Rattus norvegicus ENSRNOG00000025736 N
Tcf24 Rattus norvegicus ENSRNOG00000052668 N
ENSSHAG00000012462 Sarcophilus harrisii ENSSHAG00000012462 N
TCF23 Sus scrofa ENSSSCG00000027409 N
ENSSTOG00000007256 Ictidomys tridecemlineatus ENSSTOG00000007256 N
ENSSTOG00000015523 Ictidomys tridecemlineatus ENSSTOG00000015523 N
TCF23 Tupaia belangeri ENSTBEG00000006967 N
TCF24 Takifugu rubripes ENSTRUG00000009376 N
TCF23 Tursiops truncatus ENSTTRG00000005255 N
TCF24 Tursiops truncatus ENSTTRG00000017150 N
ENSXMAG00000008880 Xiphophorus maculatus ENSXMAG00000008880 N
Gfo_R001999 Geospiza fortis Gfo_R001999 N
Myotis_brandtii_TCF23_10031193 Myotis brandtii Myotis_brandtii_TCF23_10031193 N
Ogr10845 Ophisaurus gracilis Ogr10845 N
Pvit_15007 Pogona vitticeps Pvit_15007 N
Sakowv30044060m.g Saccoglossus kowalevskii Sakowv30044060m.g N