Pavir.Ia01219 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Ia01219 T050818_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.911 0.900
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.898 0.880
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.898 0.880
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.871 0.940
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.871 0.940
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.871 0.940
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.871 0.940
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.871 0.940
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.871 0.940
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.868 0.880
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.868 0.880
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.868 0.880
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.860 0.860
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.854 0.620
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.854 0.580
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia01219.1.p bHLH 343 392

Links

Other bHLH family TFs
Other Panicum virgatum TFs

491 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AATE000335 Anopheles atroparvus AATE000335 I
AATE018011 Anopheles atroparvus AATE018011 I
ACAC_0000050701 Angiostrongylus cantonensis ACAC_0000050701 I
ACEP14857 Atta cephalotes ACEP14857 I
ACOC_0000924001 Angiostrongylus costaricensis ACOC_0000924001 I
ACOM027979 Anopheles coluzzii ACOM027979 I
ACYPI31510 Acyrthosiphon pisum ACYPI31510 I
ACYPI31512 Acyrthosiphon pisum ACYPI31512 I
AFAF001557 Anopheles farauti AFAF001557 I
AFAF020264 Anopheles farauti AFAF020264 I
AMAM003778 Anopheles maculatus AMAM003778 I
AMAM009924 Anopheles maculatus AMAM009924 I
ANCCEY_04739 Ancylostoma ceylanicum ANCCEY_04739 I
ANCDUO_13968 Ancylostoma duodenale ANCDUO_13968 I
ASU_06642 Ascaris suum ASU_06642 I
BXY_0842900 Bursaphelenchus xylophilus BXY_0842900 I
CapteG130298 Capitella teleta CapteG130298 I
CBG03854 Caenorhabditis briggsae CBG03854 I
CBN09920 Caenorhabditis brenneri CBN09920 I
CBN18838 Caenorhabditis brenneri CBN18838 I
CJA03417 Caenorhabditis japonica CJA03417 I
Cmyd_10014184 Chelonia mydas Cmyd_10014184 I
CRE08084 Caenorhabditis remanei CRE08084 I
DICVIV_01967 Dictyocaulus viviparus DICVIV_01967 I
ENSAMEG00000015014 Ailuropoda melanoleuca ENSAMEG00000015014 I
ENSBTAG00000003540 Bos taurus ENSBTAG00000003540 I
ST18 Homo sapiens ENSG00000147488 I
MYT1L Homo sapiens ENSG00000186487 I
ENSLACG00000008399 Latimeria chalumnae ENSLACG00000008399 I
MYT1L Macaca mulatta ENSMMUG00000009310 I
ENSTGUG00000014218 Taeniopygia guttata ENSTGUG00000014218 I
EVEC_0001307101 Enterobius vermicularis EVEC_0001307101 I
GI16394 Drosophila mojavensis FBgn0139142 I
GL14771 Drosophila persimilis FBgn0152375 I
CG43689 Drosophila melanogaster FBgn0263772 I
Hba_17025 Heterorhabditis bacteriophora Hba_17025 I
HelroG85268 Helobdella robusta HelroG85268 I
HHAL001110-PA Halyomorpha halys HHAL001110-PA I
ISCW018799 Ixodes scapularis ISCW018799 I
L596_g1281 Steinernema carpocapsae L596_g1281 I
L889_g28085 Steinernema feltiae L889_g28085 I
L893_g1446 Steinernema glaseri L893_g1446 I
LCUP002242 Lucilia cuprina LCUP002242 I
Minc05804 Meloidogyne incognita Minc05804 I
NBR_0001165301 Nippostrongylus brasiliensis NBR_0001165301 I
nDi.2.2.2.g06992 Dirofilaria immitis nDi.2.2.2.g06992 I
NECAME_10938 Necator americanus NECAME_10938 I
nLs.2.1.2.g09672 Litomosoides sigmodontis nLs.2.1.2.g09672 I
Ocbimv22028295m.g Octopus bimaculoides Ocbimv22028295m.g I
Ocbimv22028296m.g Octopus bimaculoides Ocbimv22028296m.g N
OESDEN_24201 Oesophagostomum dentatum OESDEN_24201 I
PTRK_0001788400 Parastrongyloides trichosuri PTRK_0001788400 I
RSKR_0000214800 Rhabditophanes kr3021 RSKR_0000214800 I
Smp_168610 Schistosoma mansoni Smp_168610 N
SMU15021651 Schmidtea mediterranea SMU15021651 N
SMU15028607 Schmidtea mediterranea SMU15028607 I
SMUV_0000666101 Syphacia muris SMUV_0000666101 I
SPAL_0000489100 Strongyloides papillosus SPAL_0000489100 I
SPAL_0000892700 Strongyloides papillosus SPAL_0000892700 I
SSTP_0000574400 Strongyloides stercoralis SSTP_0000574400 I
SVE_1952800 Strongyloides venezuelensis SVE_1952800 I
TELCIR_22038 Teladorsagia circumcincta TELCIR_22038 I
TELCIR_26151 Teladorsagia circumcincta TELCIR_26151 I
ztf-11 Caenorhabditis elegans WBGene00009939 D
WBGene00238210 Onchocerca volvulus WBGene00238210 I
YQE_11977 Dendroctonus ponderosae YQE_11977 I