Pavir.J29021 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.J29021 T050925_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYC2
M01699_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8083 		0.826 1.000
PK18474.1
M01127_2.00 		Cannabis sativa
NRCACGTGCN
NGCACGTGYN		 PBM
Lambert et al.(2019)
pTH10273 		0.826 1.000
PK18474.1
M01768_2.00 		Cannabis sativa
NCACGWK
MWCGTGN		 PBM
Weirauch et al.(2014)
pTH9589 		0.826 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J29021.1.p bHLH 404 441

Links

Other bHLH family TFs
Other Panicum virgatum TFs

2 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_07103 Capronia coronata A1O1_07103 I 0.000
A1O7_02555 Cladophialophora yegresii A1O7_02555 I 0.000
AMAG_00740 Allomyces macrogynus AMAG_00740 I 0.000
BOTBODRAFT_169843 Botryobasidium botryosum BOTBODRAFT_169843 N 0.000
CHGG_01922 Chaetomium globosum CHGG_01922 I 0.000
CNE01220 Cryptococcus neoformans CNE01220 N 0.000
FFUJ_00530 Fusarium fujikuroi FFUJ_00530 I 0.000
FGRRES_00710 Fusarium graminearum FGRRES_00710 I 0.000
FIBRA_01283 Fibroporia radiculosa FIBRA_01283 I 0.000
FOXG_01037 Fusarium oxysporum FOXG_01037 I 0.000
FPSE_00322 Fusarium pseudograminearum FPSE_00322 I 0.000
FVEG_00478 Fusarium verticillioides FVEG_00478 I 0.000
G647_09065 Cladophialophora carrionii G647_09065 I 0.000
K443DRAFT_672745 Laccaria amethystina K443DRAFT_672745 N 0.000
L804_02990 Cryptococcus gattii L804_02990 N 0.000
LACBIDRAFT_306097 Laccaria bicolor LACBIDRAFT_306097 N 0.000
M378DRAFT_157099 Amanita muscaria M378DRAFT_157099 N 0.000
M413DRAFT_105950 Hebeloma cylindrosporum M413DRAFT_105950 N 0.000
Moror_8326 Moniliophthora roreri Moror_8326 N 0.000
PaG_00730 Pseudozyma aphidis PaG_00730 I 0.000
PAN0_005d2634 Pseudozyma antarctica PAN0_005d2634 I 0.000
PFL1_03839 Pseudozyma flocculosa PFL1_03839 I 0.000
PHSY_001107 Pseudozyma hubeiensis PHSY_001107 I 0.000
PSEUBRA_SCAF5g02385 Pseudozyma brasiliensis PSEUBRA_SCAF5g02385 I 0.000
PV04_02720 Capronia semiimmersa PV04_02720 I 0.000
SCHCODRAFT_13988 Schizophyllum commune SCHCODRAFT_13988 N 0.000
sr13711 Sporisorium reilianum sr13711 I 0.000
UHOR_04260 Ustilago hordei UHOR_04260 I 0.000
UM02664 Ustilago maydis UM02664 I 0.000