usf1.S (Xenopus laevis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 XB-GENE-6255904 T051862_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.914 1.000
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.914 1.000
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.914 1.000
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.914 1.000
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.914 1.000
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.914 1.000
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.914 1.000
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.914 1.000
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.914 1.000
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.914 1.000
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.914 1.000
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.914 1.000
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.914 1.000
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.914 1.000
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.914 1.000
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH97655 bHLH 189 244

Links

Other bHLH family TFs
Other Xenopus laevis TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACEP20954 Atta cephalotes ACEP20954 I
Cflo_02744--XP_394233.3_APIME Camponotus floridanus Cflo_02744--XP_394233.3_APIME I
CLEC000211 Cimex lectularius CLEC000211 I
DAPPUDRAFT_346996 Daphnia pulex DAPPUDRAFT_346996 I
Clk Drosophila melanogaster FBgn0023076 D
GA20318 Drosophila pseudoobscura FBgn0080313 I
GF24152 Drosophila ananassae FBgn0101146 I
GG14938 Drosophila erecta FBgn0107192 I
GH16514 Drosophila grimshawi FBgn0123985 I
GI12195 Drosophila mojavensis FBgn0134952 I
GL17825 Drosophila persimilis FBgn0155428 I
GM24989 Drosophila sechellia FBgn0179850 I
GD13034 Drosophila simulans FBgn0184756 I
GJ11427 Drosophila virilis FBgn0198685 I
GK10694 Drosophila willistoni FBgn0212707 I
GB48028 Apis mellifera GB48028 I
HHAL003628-PA Halyomorpha halys HHAL003628-PA I
HMEL008784 Heliconius melpomene HMEL008784 I
Hsal_05831--XP_394233.3_APIME Harpegnathos saltator Hsal_05831--XP_394233.3_APIME I
ISCW007040 Ixodes scapularis ISCW007040 I
KGM_10878 Danaus plexippus KGM_10878 I
LCUP014936 Lucilia cuprina LCUP014936 I
LLOJ006614 Lutzomyia longipalpis LLOJ006614 I
MCINX000525 Melitaea cinxia MCINX000525 I
NV19013 Nasonia vitripennis NV19013 I
PHUM426300 Pediculus humanus PHUM426300 I
PPAI002844 Phlebotomus papatasi PPAI002844 I
RPRC002110 Rhodnius prolixus RPRC002110 I
TC000088 Tribolium castaneum TC000088 I
YQE_03736 Dendroctonus ponderosae YQE_03736 I