neurod6 (Xenopus tropicalis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 XB-GENE-969227 T051925_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NEUROD1
M04148_2.00 		Homo sapiens
RMCATATGKYVNNNTAWTT
AAWTANNNBRMCATATGKY		 SELEX
Yin et al.(2017)
NEUROD1_FL_HT-SELEX 		0.894 0.923
NEUROD1
M08057_2.00 		Homo sapiens
NNVCAGATGGNNN
NNNCCATCTGBNN		 ChIP-seq
Mathelier et al.(2014)
MA1109.1 		0.894 0.923
NEUROD1
M08735_2.00 		Homo sapiens
RVCAGATGGY
RCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF1_HUMAN.H11MO.0.A 		0.894 0.923
Neurod1
M08764_2.00 		Mus musculus
RVCAGATGGY
RCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF1_MOUSE.H11MO.0.A 		0.894 0.923
Neurod1
M09474_2.00 		Mus musculus
RVCAGATGGY
RCCATCTGBY		 Misc
Heinz et al.(2010)
Islet-NeuroD1_GSE30298 		0.894 0.923
NEUROD1
M09873_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NEUROD_01 		0.894 0.923
NEUROD1
M09874_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NEUROD_02 		0.894 0.923
NEUROD1
M04149_2.00 		Homo sapiens
RVCATATGBYVYNBTAWTW
WAWTAVNRBRVCATATGBY		 SELEX
Yin et al.(2017)
NEUROD1_FL_Methyl-HT-SELEX 		0.894 0.923
NEUROD2
M02795_2.00 		Homo sapiens
RVCATATGKY
RMCATATGBY		 SELEX
Jolma et al.(2013)
NEUROD2_1 		0.859 0.904
NEUROD2
M04160_2.00 		Homo sapiens
RVCATATGKY
RMCATATGBY		 SELEX
Yin et al.(2017)
NEUROD2_FL_HT-SELEX 		0.859 0.904
NEUROD2
M08737_2.00 		Homo sapiens
RRCAGMTGG
CCAKCTGYY		 Misc
Kulakovskiy et al.(2013)
NDF2_HUMAN.H11MO.0.B 		0.859 0.904
Neurod2
M08770_2.00 		Mus musculus
RVCAGATGGB
VCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF2_MOUSE.H11MO.0.A 		0.859 0.904
NEUROD2
M04161_2.00 		Homo sapiens
RMCATATGBY
RVCATATGKY		 SELEX
Yin et al.(2017)
NEUROD2_FL_Methyl-HT-SELEX 		0.859 0.904
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI21278 bHLH 95 147

Links

Other bHLH family TFs
Other Xenopus tropicalis TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_00464 Capronia coronata A1O1_00464 N
A1O1_02535 Capronia coronata A1O1_02535 N
AUEXF2481DRAFT_45076 Aureobasidium subglaciale AUEXF2481DRAFT_45076 N
CADAFLAG00003334 Aspergillus flavus CADAFLAG00003334 N
ANIA_01584 Aspergillus nidulans CADANIAG00008217 N
ATEG_06092 Aspergillus terreus CADATEAG00000839 N
CFIO01_01654 Colletotrichum fioriniae CFIO01_01654 N
COCC4DRAFT_130965 Bipolaris maydis COCC4DRAFT_130965 N
COCC4DRAFT_157715 Bipolaris maydis COCC4DRAFT_157715 N
COCCADRAFT_34908 Bipolaris zeicola COCCADRAFT_34908 N
COCCADRAFT_40088 Bipolaris zeicola COCCADRAFT_40088 N
COCMIDRAFT_30122 Bipolaris oryzae COCMIDRAFT_30122 N
COCSADRAFT_34052 Bipolaris sorokiniana COCSADRAFT_34052 N
COCVIDRAFT_107313 Bipolaris victoriae COCVIDRAFT_107313 N
COCVIDRAFT_20793 Bipolaris victoriae COCVIDRAFT_20793 N
estExt_Genewise1Plus.C_70733 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_70733 N
EURHEDRAFT_415639 Aspergillus ruber EURHEDRAFT_415639 N
F503_03308 Ophiostoma piceae uamh F503_03308 N
F503_08421 Ophiostoma piceae uamh F503_08421 I
FFUJ_11117 Fusarium fujikuroi FFUJ_11117 N
fgenesh1_pg.sca_28_chr13_5_0000057 Nectria haematococca fgenesh1_pg.sca_28_chr13_5_0000057 N
fgenesh1_pg.sca_32_chr11_3_0000061 Nectria haematococca fgenesh1_pg.sca_32_chr11_3_0000061 N
fgenesh1_pg.sca_32_chr11_3_0000153 Nectria haematococca fgenesh1_pg.sca_32_chr11_3_0000153 N
HMPREF1120_00198 Exophiala dermatitidis HMPREF1120_00198 N
HMPREF1120_04953 Exophiala dermatitidis HMPREF1120_04953 N
HMPREF1120_05596 Exophiala dermatitidis HMPREF1120_05596 I
HMPREF1624_03990 Sporothrix schenckii HMPREF1624_03990 N
KUCA_T00000009001 Kuraishia capsulata KUCA_T00000009001 N
KUCA_T00000013001 Kuraishia capsulata KUCA_T00000013001 N
KUCA_T00003996001 Kuraishia capsulata KUCA_T00003996001 N
KUCA_T00004747001 Kuraishia capsulata KUCA_T00004747001 N
KUCA_T00005495001 Kuraishia capsulata KUCA_T00005495001 N
LEMA_P012820.1 Leptosphaeria maculans LEMA_P012820.1 N
M437DRAFT_60598 Aureobasidium melanogenum M437DRAFT_60598 N
MAC_06969 Metarhizium acridum MAC_06969 N
MAJ_08159 Metarhizium majus MAJ_08159 N
MBR_08966 Metarhizium brunneum MBR_08966 N
MGG_14816 Magnaporthe oryzae MGG_14816 N
MGU_09044 Metarhizium guizhouense MGU_09044 N
NechaG86666 Fusarium solani NechaG86666 N
NechaG86758 Fusarium solani NechaG86758 N
NechaG88155 Fusarium solani NechaG88155 N
PAAG_00881 Paracoccidioides sp lutzii PAAG_00881 N
Pc13g03330 Penicillium chrysogenum Pc13g03330 N
Pc21g06560 Penicillium chrysogenum Pc21g06560 N
PCH_Pc13g03330 Penicillium rubens PCH_Pc13g03330 N
PCH_Pc21g06560 Penicillium rubens PCH_Pc21g06560 N
PEX1_062920 Penicillium expansum PEX1_062920 N
PFICI_00049 Pestalotiopsis fici PFICI_00049 N
PTRG_10883 Pyrenophora triticirepentis PTRG_10883 N
PTT_06689 Pyrenophora teres PTT_06689 N
PV04_07764 Capronia semiimmersa PV04_07764 N
PV05_04423 Exophiala xenobiotica PV05_04423 N
PV06_01117 Exophiala oligosperma PV06_01117 N
PV06_07837 Exophiala oligosperma PV06_07837 N
PV06_11257 Exophiala oligosperma PV06_11257 N
PV06_11661 Exophiala oligosperma PV06_11661 N
PV06_11680 Exophiala oligosperma PV06_11680 N
PV08_03348 Exophiala spinifera PV08_03348 N
PV10_03377 Exophiala mesophila PV10_03377 N
PV11_03278 Exophiala sideris PV11_03278 N
PV11_06316 Exophiala sideris PV11_06316 N
SAKL0D00264g Lachancea kluyveri SAKL0D00264g I
SETTUDRAFT_92771 Setosphaeria turcica SETTUDRAFT_92771 N
SNOG_11030 Phaeosphaeria nodorum SNOG_11030 N
SNOG_11030 Stagonospora nodorum SNOG_11030 N
VHEMI00089 Torrubiella hemipterigena VHEMI00089 N
X797_009392 Metarhizium robertsii X797_009392 N