CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

atf3 *(Tetraodon nigroviridis)* bZIP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00170 (bZIP_1)	IPR011616	ENSTNIG00000002524	T061584_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
JDP2 M02836_2.00	Homo sapiens	ATGASTCAT	ATGASTCAT	SELEX Jolma et al.(2013) JDP2_1	0.868	0.698
JDP2 M02837_2.00	Homo sapiens	NRTGACGTCATB	VATGACGTCAYN	SELEX Jolma et al.(2013) JDP2_2	0.868	0.698
JDP2 M02838_2.00	Homo sapiens	ATGASTCAT	ATGASTCAT	SELEX Jolma et al.(2013) JDP2_3	0.868	0.698
JDP2 M02839_2.00	Homo sapiens	NRTGACGTCATN	NATGACGTCAYN	SELEX Jolma et al.(2013) JDP2_4	0.868	0.698
JDP2 M04285_2.00	Homo sapiens	NATGASTCATV	BATGASTCATN	SELEX Yin et al.(2017) JDP2_eDBD_HT-SELEX_1	0.868	0.698
JDP2 M04286_2.00	Homo sapiens	NRTGACGTCAYN	NRTGACGTCAYN	SELEX Yin et al.(2017) JDP2_eDBD_HT-SELEX_2	0.868	0.698
JDP2 M04289_2.00	Homo sapiens	NRTGMSKCAYN	NRTGMSKCAYN	SELEX Yin et al.(2017) JDP2_FL_HT-SELEX_1	0.868	0.698
JDP2 M04290_2.00	Homo sapiens	NRTKACRTMAYN	NRTKAYGTMAYN	SELEX Yin et al.(2017) JDP2_FL_HT-SELEX_2	0.868	0.698
JDP2 M04287_2.00	Homo sapiens	BATGASTCAYN	NRTGASTCATV	SELEX Yin et al.(2017) JDP2_eDBD_Methyl-HT-SELEX_1	0.868	0.698
JDP2 M04288_2.00	Homo sapiens	NRTGACRTCAYN	NRTGAYGTCAYN	SELEX Yin et al.(2017) JDP2_eDBD_Methyl-HT-SELEX_2	0.868	0.698
JDP2 M04291_2.00	Homo sapiens	NRTGASTCAYN	NRTGASTCAYN	SELEX Yin et al.(2017) JDP2_FL_Methyl-HT-SELEX_1	0.868	0.698
JDP2 M04292_2.00	Homo sapiens	NVTKACRTCAYN	NRTGAYGTMABN	SELEX Yin et al.(2017) JDP2_FL_Methyl-HT-SELEX_2	0.868	0.698
Jdp2 M00125_2.00	Mus musculus	NRTGAYDNNN	NNNHRTCAYN	PBM Badis et al.(2009) Jundm2_0911	0.866	0.698
Jdp2 M01810_2.00	Mus musculus	NNTGACGYMW	WKRCGTCANN	PBM Weirauch et al.(2014) pTH5464	0.866	0.698
Jdp2 M02861_2.00	Mus musculus	ATGASTCAT	ATGASTCAT	SELEX Jolma et al.(2013) Jdp2_1	0.866	0.698
Jdp2 M02862_2.00	Mus musculus	VATGACGTCAYN	NRTGACGTCATB	SELEX Jolma et al.(2013) Jdp2_2	0.866	0.698
Jdp2 M10033_2.00	Rattus norvegicus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$JDP2_03	0.866	0.698
Atf3 M00758_2.00	Mus musculus	NNRTKAYNN	NNRTMAYNN	PBM Weirauch et al.(2013) pTH2684	0.864	0.794
Atf3 M01807_2.00	Mus musculus	GATGACGY	RCGTCATC	PBM Weirauch et al.(2014) pTH5018	0.864	0.794
Atf3 M08825_2.00	Mus musculus	VTGACTCAB	VTGAGTCAB	Misc Kulakovskiy et al.(2013) ATF3_MOUSE.H11MO.0.A	0.864	0.794
Fosl1 M01805_2.00	Mus musculus	NNRTGACKYMN	NKRMGTCAYNN	PBM Weirauch et al.(2014) pTH5077	0.807	0.571
FOSL1 M04333_2.00	Homo sapiens	NRTGAWTCAYN	NRTGAWTCAYN	SELEX Yin et al.(2017) FOSL1_FL_HT-SELEX_1	0.807	0.571
FOSL1 M04334_2.00	Homo sapiens	NRTGACGTCAYN	NRTGACGTCAYN	SELEX Yin et al.(2017) FOSL1_FL_HT-SELEX_2	0.807	0.571
FOSL1 M04335_2.00	Homo sapiens	DRTGAYRCR	YGYRTCAYH	SELEX Yin et al.(2017) FOSL1_FL_HT-SELEX_3	0.807	0.571
FOSL1 M04035_2.00	Homo sapiens	RTGACGTCAY	RTGACGTCAY	SELEX Rodriguez-Martinez et al.(2017) FOSL1.1	0.807	0.571
FOSL1 M04036_2.00	Homo sapiens	GTCAYCRRTGAC	GTCAYYGRTGAC	SELEX Rodriguez-Martinez et al.(2017) FOSL1.2	0.807	0.571
FOSL1 M08071_2.00	Homo sapiens	DRTGASTCAKV	BMTGASTCAYH	ChIP-seq Mathelier et al.(2014) MA0477.1	0.807	0.571
FOSL1 M07833_2.00	Homo sapiens	NDRTGASTCAB	VTGASTCAYHN	ChIP-seq Gerstein et al.(2012) K562_FOSL1_HudsonAlpha	0.807	0.571
FOSL1 M08805_2.00	Homo sapiens	NVTGACTCABNN	NNVTGAGTCABN	Misc Kulakovskiy et al.(2013) FOSL1_HUMAN.H11MO.0.A	0.807	0.571
Fosl1 M08821_2.00	Mus musculus	NVTGACTCABNN	NNVTGAGTCABN	Misc Kulakovskiy et al.(2013) FOSL1_MOUSE.H11MO.0.A	0.807	0.571
FOSL1 M09490_2.00	Homo sapiens	NNVTGASTCABN	NVTGASTCABNN	Misc Heinz et al.(2010) BT549-Fra1_GSE46166	0.807	0.571
FOSL1 M10000_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOSL1_01	0.807	0.571
FOSL1 M10001_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FRA1_Q5	0.807	0.571
FOSL1 M10002_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FRA1_Q6_01	0.807	0.571
FOSL1 M10003_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FRA1_Q6	0.807	0.571
FOSL1 M04336_2.00	Homo sapiens	BRTGASTCATV	BATGASTCAYV	SELEX Yin et al.(2017) FOSL1_FL_Methyl-HT-SELEX_1	0.807	0.571
FOSL1 M04337_2.00	Homo sapiens	NRTSACGTCAYN	NRTGACGTSAYN	SELEX Yin et al.(2017) FOSL1_FL_Methyl-HT-SELEX_2	0.807	0.571
FOSL1 M04338_2.00	Homo sapiens	RATGAYRCR	YGYRTCATY	SELEX Yin et al.(2017) FOSL1_FL_Methyl-HT-SELEX_3	0.807	0.571
ATF3 M04321_2.00	Homo sapiens	NRTGACGTCAYN	NRTGACGTCAYN	SELEX Yin et al.(2017) ATF3_eDBD_HT-SELEX	0.793	0.460
ATF3 M04323_2.00	Homo sapiens	NRTGACGTCAYN	NRTGACGTCAYN	SELEX Yin et al.(2017) ATF3_FL_HT-SELEX	0.793	0.460
ATF3 M04032_2.00	Homo sapiens	RTGACGTCAK	MTGACGTCAY	SELEX Rodriguez-Martinez et al.(2017) ATF3.1	0.793	0.460
ATF3 M04033_2.00	Homo sapiens	RTGACTCAY	RTGAGTCAY	SELEX Rodriguez-Martinez et al.(2017) ATF3.2	0.793	0.460
ATF3 M07822_2.00	Homo sapiens	VGTCACGTGRB	VYCACGTGACB	ChIP-seq Gerstein et al.(2012) GM12878_ATF3_HudsonAlpha	0.793	0.460
ATF3 M07823_2.00	Homo sapiens	VGTCACGTGRB	VYCACGTGACB	ChIP-seq Gerstein et al.(2012) H1-hESC_ATF3_HudsonAlpha	0.793	0.460
ATF3 M07824_2.00	Homo sapiens	VGTCACGTGRB	VYCACGTGACB	ChIP-seq Gerstein et al.(2012) HepG2_ATF3_HudsonAlpha	0.793	0.460
ATF3 M07825_2.00	Homo sapiens	VRTSACGTVR	YBACGTSAYB	ChIP-seq Gerstein et al.(2012) K562_ATF3_Harvard	0.793	0.460
ATF3 M08187_2.00	Homo sapiens	GTCACGTG	CACGTGAC	ChIP-seq Contrino et al.(2012) Mv41	0.793	0.460
ATF3 M08188_2.00	Homo sapiens	NRTGASTCAY	RTGASTCAYN	ChIP-seq Contrino et al.(2012) Mv43	0.793	0.460
ATF3 M08801_2.00	Homo sapiens	RRTSACGTVRB	VYBACGTSAYY	Misc Kulakovskiy et al.(2013) ATF3_HUMAN.H11MO.0.A	0.793	0.460
ATF3 M09489_2.00	Homo sapiens	NVTGASTCABNN	NNVTGASTCABN	Misc Heinz et al.(2010) GBM-ATF3_GSE33912	0.793	0.460
ATF3 M09977_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ATF3_02	0.793	0.460
ATF3 M09978_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ATF3_05	0.793	0.460
ATF3 M09979_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ATF3_Q6_01	0.793	0.460
ATF3 M09980_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ATF3_Q6_02	0.793	0.460
ATF3 M09981_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ATF3_Q6	0.793	0.460
ATF3 M04322_2.00	Homo sapiens	NRTGACRTCAYH	DRTGAYGTCAYN	SELEX Yin et al.(2017) ATF3_eDBD_Methyl-HT-SELEX	0.793	0.460
ATF3 M04324_2.00	Homo sapiens	NRTGACRTCAYH	DRTGAYGTCAYN	SELEX Yin et al.(2017) ATF3_FL_Methyl-HT-SELEX	0.793	0.460
Atf3 M03648_2.00	Drosophila melanogaster	NRTKACGTMAYN	NRTKACGTMAYN	SELEX Nitta et al.(2015) Atf3_1	0.785	0.571
For this family, TFs with SR scores > 0.782* will likely have a similar motif*