Pavir.Ca00403 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Ca00403 T072344_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK23964.1
M01160_2.00 		Cannabis sativa
DNKMCACGTV
BACGTGKMNH		 PBM
Lambert et al.(2019)
pTH10151 		0.870 0.812
BZIP68
M01770_2.00 		Arabidopsis thaliana
BMCASGBND
HNVCSTGKV		 PBM
Weirauch et al.(2014)
pTH8192 		0.864 0.734
BZIP68
M06752_2.00 		Arabidopsis thaliana
DNWKNHSACGTGGCR
YGCCACGTSDNMWNH		 Dap-seq
OMalley et al.(2016)
bZIP68_col_a 		0.864 0.734
HBP1A_WHEAT
M10041_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HBP1A_Q2 		0.837 0.781
HBP1A_WHEAT
M10042_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HBPA1_Q6_01 		0.837 0.781
GBF1
M01783_2.00 		Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD		 PBM
Weirauch et al.(2014)
pTH7259 		0.832 0.688
GBF1
M09913_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_01 		0.832 0.688
GBF1
M09914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1F_Q2 		0.832 0.688
GBF1
M09915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_Q2_01 		0.832 0.688
GBF1
M09916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_Q2 		0.832 0.688
BZIP16
M06764_2.00 		Arabidopsis thaliana
DDWKVYSACGTGGCA
TGCCACGTSRBMWHH		 Dap-seq
OMalley et al.(2016)
bZIP16_colamp_a 		0.827 0.688
BZIP16
M06765_2.00 		Arabidopsis thaliana
DDWKVHSACGTGGCA
TGCCACGTSDBMWHH		 Dap-seq
OMalley et al.(2016)
bZIP16_col_v3a 		0.827 0.688
Q40645_ORYSA
M10050_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$OSBZ8_Q6 		0.793 0.578
Q41109_PHAVU
M10078_2.00 		Phaseolus vulgaris Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ROM_Q2 		0.793 0.594
GBF2
M01781_2.00 		Arabidopsis thaliana
BMCASSNNN
NNNSSTGKV		 PBM
Weirauch et al.(2014)
pTH7258 		0.789 0.562
TAF1_TOBAC
M10079_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAF1_01 		0.787 0.594
TAF1_TOBAC
M10080_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAF1_Q2 		0.787 0.594
PK09653.1
M01156_2.00 		Cannabis sativa
NNMCASVNNN
NNNBSTGKNN		 PBM
Lambert et al.(2019)
pTH10114 		0.783 0.594
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00403.1.p bZIP 288 351

Links

Other bZIP family TFs
Other Panicum virgatum TFs

266 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29589.m001281 Ricinus communis 29589.m001281 N 0.000
30054.m000824 Ricinus communis 30054.m000824 N 0.000
Aquca_009_01064 Aquilegia coerulea Aquca_009_01064 N 0.000
BGIOSGA001528 Oryza indica BGIOSGA001528 N 0.000
BGIOSGA026486 Oryza indica BGIOSGA026486 N 0.000
BGIOSGA035191 Oryza indica BGIOSGA035191 N 0.000
BRADI3G43000 Brachypodium distachyon BRADI3G43000 N 0.000
cassava28497.m1 Manihot esculenta cassava28497.m1 N 0.000
cassava37607.valid.m1 Manihot esculenta cassava37607.valid.m1 N 0.000
Ca_00735 Cicer arietinum Ca_00735 N 0.000
Ca_19047 Cicer arietinum Ca_19047 N 0.000
chr3.CM0396.500.nd Lotus japonicus chr3.CM0396.500.nd N 0.000
Ciclev10012712m.g Citrus clementina Ciclev10012712m.g N 0.000
Cla001071 Citrullus lanatus Cla001071 N 0.000
Cucsa.200310 Cucumis sativus Cucsa.200310 N 0.000
Cucsa.378840 Cucumis sativus Cucsa.378840 N 0.000
Eucgr.A01594 Eucalyptus grandis Eucgr.A01594 N 0.000
Eucgr.B03915 Eucalyptus grandis Eucgr.B03915 N 0.000
evm.TU.supercontig_30.61 Carica papaya evm.TU.supercontig_30.61 N 0.000
evm.TU.supercontig_5.128 Carica papaya evm.TU.supercontig_5.128 N 0.000
F775_22386 Aegilops tauschii F775_22386 N 0.000
F775_30314 Aegilops tauschii F775_30314 N 0.000
gene00954-v1.0-hybrid Fragaria vesca gene00954-v1.0-hybrid N 0.000
GLYMA03G34530 Glycine max GLYMA03G34530 N 0.000
GLYMA10G07240 Glycine max GLYMA10G07240 N 0.000
GLYMA13G21140 Glycine max GLYMA13G21140 N 0.000
GLYMA19G37220 Glycine max GLYMA19G37220 N 0.000
Gorai.001G117900 Gossypium raimondii Gorai.001G117900 N 0.000
Gorai.006G159900 Gossypium raimondii Gorai.006G159900 N 0.000
Gorai.009G411100 Gossypium raimondii Gorai.009G411100 N 0.000
GRMZM2G171934 Zea mays GRMZM2G171934 N 0.000
GRMZM2G408887 Zea mays GRMZM2G408887 N 0.000
GSMUA_Achr7G04460_001 Musa acuminata GSMUA_Achr7G04460_001 N 0.000
GSMUA_AchrUn_randomG07560_001 Musa acuminata GSMUA_AchrUn_randomG07560_001 N 0.000
LPERR08G20370 Leersia perrieri LPERR08G20370 N 0.000
Lus10014396.g Linum usitatissimum Lus10014396.g N 0.000
Lus10027735.g Linum usitatissimum Lus10027735.g N 0.000
Lus10035554.g Linum usitatissimum Lus10035554.g N 0.000
mgf006916m Mimulus guttatus mgf006916m N 0.000
mgf013167m Mimulus guttatus mgf013167m N 0.000
mgf023930m Mimulus guttatus mgf023930m N 0.000
MLOC_23439 Hordeum vulgare MLOC_23439 N 0.000
MLOC_26846 Hordeum vulgare MLOC_26846 N 0.000
MTR_1g062160 Medicago truncatula MTR_1g062160 N 0.000
MTR_7g102790 Medicago truncatula MTR_7g102790 N 0.000
OB01G27340 Oryza brachyantha OB01G27340 N 0.000
OB08G30470 Oryza brachyantha OB08G30470 N 0.000
OBART01G17820 Oryza barthii OBART01G17820 N 0.000
OBART08G23610 Oryza barthii OBART08G23610 N 0.000
OBART11G11470 Oryza barthii OBART11G11470 N 0.000
OGLUM01G21080 Oryza glumaepatula OGLUM01G21080 N 0.000
OGLUM08G25080 Oryza glumaepatula OGLUM08G25080 N 0.000
OGLUM11G11350 Oryza glumaepatula OGLUM11G11350 N 0.000
OLONG_020563 Oryza longistaminata OLONG_020563 N 0.000
OMERI08G18450 Oryza meridionalis OMERI08G18450 N 0.000
ONIVA08G26670 Oryza nivara ONIVA08G26670 N 0.000
OPUNC01G18340 Oryza punctata OPUNC01G18340 N 0.000
OPUNC08G21610 Oryza punctata OPUNC08G21610 N 0.000
orange1.1g027730m.g Citrus sinensis orange1.1g027730m.g N 0.000
orange1.1g028583m.g Citrus sinensis orange1.1g028583m.g N 0.000
ORGLA08G0190300 Oryza glaberrima ORGLA08G0190300 N 0.000
ORGLA11G0098700 Oryza glaberrima ORGLA11G0098700 N 0.000
ORUFI08G26100 Oryza rufipogon ORUFI08G26100 N 0.000
Pavir.Ea01651 Panicum virgatum Pavir.Ea01651 N 0.000
Pavir.Fa00017 Panicum virgatum Pavir.Fa00017 N 0.000
Pavir.Fb02226 Panicum virgatum Pavir.Fb02226 N 0.000
PGSC0003DMG400008598 Solanum tuberosum PGSC0003DMG400008598 N 0.000
PK29286.1 Cannabis sativa PK29286.1 N 0.000
Pm026291 Prunus mume Pm026291 N 0.000
POPTR_0001s02390 Populus trichocarpa POPTR_0001s02390 N 0.000
POPTR_0001s21990 Populus trichocarpa POPTR_0001s21990 N 0.000
POPTR_0009s00830 Populus trichocarpa POPTR_0009s00830 N 0.000
POPTR_0016s10920 Populus trichocarpa POPTR_0016s10920 N 0.000
PRUPE_ppa011630mg Prunus persica PRUPE_ppa011630mg N 0.000
SapurV1A.0226s0270 Salix purpurea SapurV1A.0226s0270 N 0.000
SapurV1A.0288s0160 Salix purpurea SapurV1A.0288s0160 N 0.000
SapurV1A.0360s0060 Salix purpurea SapurV1A.0360s0060 N 0.000
Sb07g024020 Sorghum bicolor Sb07g024020 N 0.000
Sb08g005380 Sorghum bicolor Sb08g005380 N 0.000
Solyc10g085800.1 Solanum lycopersicum Solyc10g085800.1 N 0.000
TCM_041560 Theobroma cacao TCM_041560 N 0.000
TRAES3BF035900070CFD_g Triticum aestivum TRAES3BF035900070CFD_g N 0.000
TRAES3BF035900140CFD_g Triticum aestivum TRAES3BF035900140CFD_g N 0.000
TRAES3BF035900190CFD_g Triticum aestivum TRAES3BF035900190CFD_g N 0.000
Traes_3AL_970EF6E45 Triticum aestivum Traes_3AL_970EF6E45 N 0.000
Traes_3AL_CF608F443 Triticum aestivum Traes_3AL_CF608F443 N 0.000
Traes_3DL_6A5CA5C37 Triticum aestivum Traes_3DL_6A5CA5C37 N 0.000
Traes_3DL_96F825D26 Triticum aestivum Traes_3DL_96F825D26 N 0.000
Traes_7AS_9EA289C71 Triticum aestivum Traes_7AS_9EA289C71 N 0.000
Traes_7DS_620E0D488 Triticum aestivum Traes_7DS_620E0D488 N 0.000
TRIUR3_09966 Triticum urartu TRIUR3_09966 N 0.000
TRIUR3_27842 Triticum urartu TRIUR3_27842 N 0.000
TRIUR3_34039 Triticum urartu TRIUR3_34039 N 0.000