Bo00576s170 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo00576s170 T081695_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.822 0.957
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.822 0.957
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.772 0.804
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.766 0.717
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.762 0.739
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.762 0.739
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.761 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo00576s170.1 C2H2 ZF 29 51
Bo00576s170.1 C2H2 ZF 69 91

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

313 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
16040_YML099C Saccharomyces mikatae 16040_YML099C I
17710_YML099C Saccharomyces paradoxus 17710_YML099C I
18194_YML099C Saccharomyces bayanus 18194_YML099C I
AACERI_AaceriAAL175W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAL175W I
AGOS_AAL175W Ashbya gossypii AGOS_AAL175W I
CaO19.10262 Candida albicans CaO19.10262 I
CD36_42420 Candida dubliniensis CD36_42420 I
CORT_0E00270 Candida orthopsilosis CORT_0E00270 I
CPAG_00315 Candida parapsilosis CPAG_00315 I
CTRG_00138 Candida tropicalis CTRG_00138 I
DEHA2E16302g Debaryomyces hansenii DEHA2E16302g I
Ecym_8159 Eremothecium cymbalariae Ecym_8159 I
e_gww1.1.1.1491.1 Pichia stipitis e_gww1.1.1.1491.1 I
G210_1017 Candida maltosa G210_1017 I
KLLA0_D10197g Kluyveromyces lactis KLLA0_D10197g I
KLTH0E16500g Kluyveromyces thermotolerans KLTH0E16500g I
KLTH0E16500g Lachancea thermotolerans KLTH0E16500g I
KNAG_0J00210 Kazachstania naganishii KNAG_0J00210 I
Kpol_538p52 Vanderwaltozyma polyspora Kpol_538p52 I
Kwal_9688 Kluyveromyces waltii Kwal_9688 I
LELG_04177 Lodderomyces elongisporus LELG_04177 I
NCAS_0C00220 Naumovozyma castellii NCAS_0C00220 I
PGUG_00229 Candida guilliermondii PGUG_00229 N
PGUG_00229 Meyerozyma guilliermondii PGUG_00229 N
PICST_51603 Scheffersomyces stipitis PICST_51603 I
Scas_Contig626.6 Saccharomyces castellii Scas_Contig626.6 I
SKUD_195006 Saccharomyces kudriavzevii SKUD_195006 I
SPAPADRAFT_69629 Spathaspora passalidarum SPAPADRAFT_69629 I
SU7_2431 Saccharomyces arboricola SU7_2431 I
TDEL_0B00480 Torulaspora delbrueckii TDEL_0B00480 I
TPHA_0C04980 Tetrapisispora phaffii TPHA_0C04980 N
TRIATDRAFT_141953 Trichoderma atroviride TRIATDRAFT_141953 I
ARG81 Saccharomyces cerevisiae YML099C D
ZBAI_03002 Zygosaccharomyces bailii ZBAI_03002 I
ZBAI_08687 Zygosaccharomyces bailii ZBAI_08687 I
ZYRO0A00440g Zygosaccharomyces rouxii ZYRO0A00440g I