Bo1g113530 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo1g113530 T081705_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.822 0.935
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.803 0.870
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.761
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.739
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.796 0.826
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.796 0.826
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.796 0.826
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.804
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g113530.1 C2H2 ZF 102 124
Bo1g113530.1 C2H2 ZF 157 179

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_010_00704 Aquilegia coerulea Aquca_010_00704 I 0.000
ZAT11 Arabidopsis thaliana AT2G37430 I 0.000
BGIOSGA013831 Oryza indica BGIOSGA013831 I 0.000
BGIOSGA013832 Oryza indica BGIOSGA013832 I 0.000
BGIOSGA018935 Oryza indica BGIOSGA018935 I 0.000
Bra030981 Brassica rapa Bra030981 I 0.000
Bra039806 Brassica rapa Bra039806 I 0.000
BRADI1G03770 Brachypodium distachyon BRADI1G03770 I 0.000
BRADI1G03780 Brachypodium distachyon BRADI1G03780 I 0.000
BRADI1G03790 Brachypodium distachyon BRADI1G03790 I 0.000
BRADI2G37430 Brachypodium distachyon BRADI2G37430 I 0.000
Cla008415 Citrullus lanatus Cla008415 I 0.000
Cla013490 Citrullus lanatus Cla013490 I 0.000
Cucsa.213470 Cucumis sativus Cucsa.213470 I 0.000
Cucsa.379890 Cucumis sativus Cucsa.379890 I 0.000
Eucgr.B02397 Eucalyptus grandis Eucgr.B02397 I 0.000
F775_08752 Aegilops tauschii F775_08752 I 0.000
F775_17661 Aegilops tauschii F775_17661 I 0.000
F775_18608 Aegilops tauschii F775_18608 I 0.000
F775_18609 Aegilops tauschii F775_18609 I 0.000
F775_18611 Aegilops tauschii F775_18611 I 0.000
F775_22659 Aegilops tauschii F775_22659 I 0.000
F775_30269 Aegilops tauschii F775_30269 I 0.000
F775_30895 Aegilops tauschii F775_30895 I 0.000
F775_30896 Aegilops tauschii F775_30896 I 0.000
F775_52290 Aegilops tauschii F775_52290 I 0.000
F775_52353 Aegilops tauschii F775_52353 I 0.000
F775_52535 Aegilops tauschii F775_52535 I 0.000
gene13960-v1.0-hybrid Fragaria vesca gene13960-v1.0-hybrid I 0.000
GRMZM2G002805 Zea mays GRMZM2G002805 I 0.000
GRMZM2G002815 Zea mays GRMZM2G002815 I 0.000
GRMZM2G061626 Zea mays GRMZM2G061626 I 0.000
LPERR03G33230 Leersia perrieri LPERR03G33230 I 0.000
LPERR03G33240 Leersia perrieri LPERR03G33240 I 0.000
LPERR05G01000 Leersia perrieri LPERR05G01000 I 0.000
MDP0000170739 Malus domestica MDP0000170739 I 0.000
MDP0000224773 Malus domestica MDP0000224773 I 0.000
MDP0000237150 Malus domestica MDP0000237150 I 0.000
MDP0000595671 Malus domestica MDP0000595671 I 0.000
MDP0000606526 Malus domestica MDP0000606526 I 0.000
MLOC_14920 Hordeum vulgare MLOC_14920 I 0.000
MLOC_19822 Hordeum vulgare MLOC_19822 I 0.000
MLOC_39001 Hordeum vulgare MLOC_39001 I 0.000
MLOC_63032 Hordeum vulgare MLOC_63032 I 0.000
MLOC_67028 Hordeum vulgare MLOC_67028 I 0.000
MLOC_76196 Hordeum vulgare MLOC_76196 I 0.000
OB03G46010 Oryza brachyantha OB03G46010 I 0.000
OBART03G39050 Oryza barthii OBART03G39050 I 0.000
OBART05G01050 Oryza barthii OBART05G01050 I 0.000
OGLUM03G38900 Oryza glumaepatula OGLUM03G38900 I 0.000
OGLUM03G38910 Oryza glumaepatula OGLUM03G38910 I 0.000
OGLUM05G01060 Oryza glumaepatula OGLUM05G01060 I 0.000
OMERI03G35870 Oryza meridionalis OMERI03G35870 I 0.000
OMERI03G35880 Oryza meridionalis OMERI03G35880 I 0.000
OMERI05G01120 Oryza meridionalis OMERI05G01120 I 0.000
ONIVA03G40710 Oryza nivara ONIVA03G40710 I 0.000
ONIVA03G40720 Oryza nivara ONIVA03G40720 I 0.000
ONIVA05G01090 Oryza nivara ONIVA05G01090 I 0.000
OPUNC05G00940 Oryza punctata OPUNC05G00940 I 0.000
ORGLA03G0358100 Oryza glaberrima ORGLA03G0358100 I 0.000
ORGLA03G0358200 Oryza glaberrima ORGLA03G0358200 I 0.000
ORGLA05G0010800 Oryza glaberrima ORGLA05G0010800 I 0.000
ORUFI03G40740 Oryza rufipogon ORUFI03G40740 I 0.000
ORUFI05G01070 Oryza rufipogon ORUFI05G01070 I 0.000
OS03G0820300 Oryza sativa OS03G0820300 I 0.000
OS03G0820400 Oryza sativa OS03G0820400 I 0.000
OS05G0114400 Oryza sativa OS05G0114400 I 0.000
Pavir.Ca00650 Panicum virgatum Pavir.Ca00650 I 0.000
Pavir.Ia00291 Panicum virgatum Pavir.Ia00291 I 0.000
Pavir.Ia00292 Panicum virgatum Pavir.Ia00292 I 0.000
Pavir.J00893 Panicum virgatum Pavir.J00893 I 0.000
Pavir.J00894 Panicum virgatum Pavir.J00894 I 0.000
PGSC0003DMG400015531 Solanum tuberosum PGSC0003DMG400015531 I 0.000
PGSC0003DMG400015532 Solanum tuberosum PGSC0003DMG400015532 I 0.000
PGSC0003DMG400015533 Solanum tuberosum PGSC0003DMG400015533 I 0.000
PGSC0003DMG400015534 Solanum tuberosum PGSC0003DMG400015534 I 0.000
PGSC0003DMG400015557 Solanum tuberosum PGSC0003DMG400015557 I 0.000
PGSC0003DMG400015558 Solanum tuberosum PGSC0003DMG400015558 I 0.000
Sb01g003280 Sorghum bicolor Sb01g003280 I 0.000
Sb09g001560 Sorghum bicolor Sb09g001560 I 0.000
Si023353m.g Setaria italica Si023353m.g I 0.000
Si037251m.g Setaria italica Si037251m.g I 0.000
Si037672m.g Setaria italica Si037672m.g I 0.000
Solyc11g073060.1 Solanum lycopersicum Solyc11g073060.1 I 0.000
Traes_1AS_8F01029FE Triticum aestivum Traes_1AS_8F01029FE I 0.000
Traes_1BS_22E395F75 Triticum aestivum Traes_1BS_22E395F75 I 0.000
Traes_1BS_527ED00B9 Triticum aestivum Traes_1BS_527ED00B9 I 0.000
Traes_1BS_7B7D5282B Triticum aestivum Traes_1BS_7B7D5282B I 0.000
Traes_1DS_75AF80583 Triticum aestivum Traes_1DS_75AF80583 I 0.000
Traes_1DS_CE96E8BF0 Triticum aestivum Traes_1DS_CE96E8BF0 I 0.000
Traes_1DS_D1F453705 Triticum aestivum Traes_1DS_D1F453705 I 0.000
Traes_5BL_3A9D3CEEF Triticum aestivum Traes_5BL_3A9D3CEEF I 0.000
Traes_5BL_3B50B6963 Triticum aestivum Traes_5BL_3B50B6963 I 0.000
Traes_5BL_630A8A142 Triticum aestivum Traes_5BL_630A8A142 I 0.000
Traes_5BL_63AE36D3A Triticum aestivum Traes_5BL_63AE36D3A I 0.000
Traes_5BL_6F2D345E2 Triticum aestivum Traes_5BL_6F2D345E2 I 0.000
Traes_5BL_8DB8274DB1 Triticum aestivum Traes_5BL_8DB8274DB1 I 0.000
Traes_5BL_9C687EE11 Triticum aestivum Traes_5BL_9C687EE11 I 0.000
Traes_5BL_B038BE0A3 Triticum aestivum Traes_5BL_B038BE0A3 I 0.000
Traes_5BL_BB99746DD Triticum aestivum Traes_5BL_BB99746DD I 0.000
Traes_5BL_D53A846BE Triticum aestivum Traes_5BL_D53A846BE I 0.000
Traes_5BL_F74D668D9 Triticum aestivum Traes_5BL_F74D668D9 I 0.000
Traes_5DL_4B4927090 Triticum aestivum Traes_5DL_4B4927090 I 0.000
Traes_5DL_4E890ABF3 Triticum aestivum Traes_5DL_4E890ABF3 I 0.000
Traes_5DL_50E35B4F3 Triticum aestivum Traes_5DL_50E35B4F3 I 0.000
Traes_5DL_90F570468 Triticum aestivum Traes_5DL_90F570468 I 0.000
Traes_5DL_F269EF70D Triticum aestivum Traes_5DL_F269EF70D I 0.000
TRIUR3_01057 Triticum urartu TRIUR3_01057 N 0.000
TRIUR3_01060 Triticum urartu TRIUR3_01060 I 0.000
TRIUR3_01063 Triticum urartu TRIUR3_01063 I 0.000
TRIUR3_01065 Triticum urartu TRIUR3_01065 I 0.000
TRIUR3_04728 Triticum urartu TRIUR3_04728 I 0.000
TRIUR3_11899 Triticum urartu TRIUR3_11899 I 0.000
TRIUR3_12166 Triticum urartu TRIUR3_12166 I 0.000
TRIUR3_15911 Triticum urartu TRIUR3_15911 I 0.000
TRIUR3_15912 Triticum urartu TRIUR3_15912 I 0.000