Bo3g037560 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo3g037560 T081727_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.803 0.957
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.803 0.891
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.778 0.870
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.776 0.696
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.776 0.696
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.776 0.696
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.775 0.696
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.775 0.674
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.766 0.717
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.766 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g037560.1 C2H2 ZF 170 192
Bo3g037560.1 C2H2 ZF 218 240

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
10586_YHR084W Saccharomyces bayanus 10586_YHR084W I 0.000
9948_YHR084W Saccharomyces mikatae 9948_YHR084W I 0.000
AACERI_AaceriADR304W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADR304W I 0.000
AGOS_ADR304W Ashbya gossypii AGOS_ADR304W I 0.000
AWRI1499_4487 Brettanomyces bruxellensis AWRI1499_4487 I 0.000
BN7_3628 Wickerhamomyces ciferrii BN7_3628 I 0.000
CAGL0H02145g Candida glabrata CAGL0H02145g I 0.000
CAGL0M01254g Candida glabrata CAGL0M01254g I 0.000
CANTEDRAFT_127609 Candida tenuis CANTEDRAFT_127609 I 0.000
CaO19.11911 Candida albicans CaO19.11911 I 0.000
CaO19.4433 Candida albicans CaO19.4433 I 0.000
CD36_06880 Candida dubliniensis CD36_06880 I 0.000
CLUG_02576 Candida lusitaniae CLUG_02576 I 0.000
CLUG_02576 Clavispora lusitaniae CLUG_02576 I 0.000
CORT_0A07880 Candida orthopsilosis CORT_0A07880 I 0.000
CPAG_01041 Candida parapsilosis CPAG_01041 I 0.000
CTRG_04159 Candida tropicalis CTRG_04159 I 0.000
DEHA2F25894g Debaryomyces hansenii DEHA2F25894g I 0.000
Ecym_8007 Eremothecium cymbalariae Ecym_8007 I 0.000
estExt_gwp_genewisePlus_worm.C_chr_6.10823 Pichia stipitis estExt_gwp_genewisePlus_worm.C_chr_6.10823 I 0.000
GNLVRS01_PISO0M06744g Millerozyma farinosa GNLVRS01_PISO0M06744g I 0.000
GNLVRS01_PISO0N06877g Millerozyma farinosa GNLVRS01_PISO0N06877g I 0.000
HPODL_03704 Ogataea parapolymorpha HPODL_03704 I 0.000
KAFR_0D04350 Kazachstania africana KAFR_0D04350 I 0.000
KAFR_0D04820 Kazachstania africana KAFR_0D04820 I 0.000
KLLA0_E17139g Kluyveromyces lactis KLLA0_E17139g I 0.000
KLTH0E03586g Lachancea thermotolerans KLTH0E03586g I 0.000
KLTH0E03586g Kluyveromyces thermotolerans KLTH0E03586g I 0.000
KNAG_0B04450 Kazachstania naganishii KNAG_0B04450 I 0.000
KNAG_0C05340 Kazachstania naganishii KNAG_0C05340 I 0.000
Kpol_1055p10 Vanderwaltozyma polyspora Kpol_1055p10 I 0.000
KUCA_T00000816001 Kuraishia capsulata KUCA_T00000816001 I 0.000
Kwal_20171 Kluyveromyces waltii Kwal_20171 I 0.000
LALA0_S05e03730g Lachancea lanzarotensis LALA0_S05e03730g I 0.000
LELG_00842 Lodderomyces elongisporus LELG_00842 I 0.000
NCAS_0F03020 Naumovozyma castellii NCAS_0F03020 I 0.000
NCAS_0H01800 Naumovozyma castellii NCAS_0H01800 I 0.000
NDAI_0C04470 Naumovozyma dairenensis NDAI_0C04470 I 0.000
PAS_chr4_0937 Komagataella pastoris PAS_chr4_0937 I 0.000
PGUG_03108 Meyerozyma guilliermondii PGUG_03108 I 0.000
PGUG_03108 Candida guilliermondii PGUG_03108 I 0.000
PICST_84653 Scheffersomyces stipitis PICST_84653 I 0.000
SAKL0G08184g Lachancea kluyveri SAKL0G08184g I 0.000
Scas_Contig646.6 Saccharomyces castellii Scas_Contig646.6 I 0.000
SPAPADRAFT_130733 Spathaspora passalidarum SPAPADRAFT_130733 I 0.000
SU7_1463 Saccharomyces arboricola SU7_1463 I 0.000
TBLA_0A03270 Tetrapisispora blattae TBLA_0A03270 I 0.000
TBLA_0H01800 Tetrapisispora blattae TBLA_0H01800 I 0.000
TDEL_0E02480 Torulaspora delbrueckii TDEL_0E02480 I 0.000
TPHA_0D02230 Tetrapisispora phaffii TPHA_0D02230 I 0.000
XP_002493672.1 Pichia pastoris XP_002493672.1 I 0.000
STE12 Saccharomyces cerevisiae YHR084W D 0.000
ZBAI_01972 Zygosaccharomyces bailii ZBAI_01972 I 0.000
ZBAI_06743 Zygosaccharomyces bailii ZBAI_06743 I 0.000