Bra006692 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra006692 T081895_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.803 0.935
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.772 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.771 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.771 0.761
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.768 0.826
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.761 0.717
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.761 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra006692.1-P C2H2 ZF 36 58
Bra006692.1-P C2H2 ZF 80 102

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

356 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB03428.1 Alternaria brassicicola AB03428.1 N 0.000
Bcin15g02950 Botrytis cinerea Bcin15g02950 I 0.000
ACLA_058700 Aspergillus clavatus CADACLAG00005706 I 0.000
ANIA_01518 Aspergillus nidulans CADANIAG00008146 D 0.000
NFIA_098020 Neosartorya fischeri CADNFIAG00009187 I 0.000
COCC4DRAFT_54743 Bipolaris maydis COCC4DRAFT_54743 I 0.000
COCMIDRAFT_8447 Bipolaris oryzae COCMIDRAFT_8447 I 0.000
COCSADRAFT_27300 Bipolaris sorokiniana COCSADRAFT_27300 I 0.000
COCVIDRAFT_17560 Bipolaris victoriae COCVIDRAFT_17560 I 0.000
EURHEDRAFT_454642 Aspergillus ruber EURHEDRAFT_454642 I 0.000
e_gw1.00168.63.1 Aspergillus carbonarius e_gw1.00168.63.1 I 0.000
HMPREF1120_07579 Exophiala dermatitidis HMPREF1120_07579 I 0.000
LEMA_P029230.1 Leptosphaeria maculans LEMA_P029230.1 N 0.000
Pc20g11250 Penicillium chrysogenum Pc20g11250 I 0.000
PCH_Pc20g11250 Penicillium rubens PCH_Pc20g11250 I 0.000
PITC_059030 Penicillium italicum PITC_059030 I 0.000
PTRG_07912 Pyrenophora triticirepentis PTRG_07912 N 0.000
PTT_08641 Pyrenophora teres PTT_08641 N 0.000
PV09_04934 Verruconis gallopava PV09_04934 N 0.000
PV10_06301 Exophiala mesophila PV10_06301 N 0.000
SEPMUDRAFT_35926 Sphaerulina musiva SEPMUDRAFT_35926 N 0.000
SETTUDRAFT_159896 Setosphaeria turcica SETTUDRAFT_159896 N 0.000
U727_0043425051 Penicillium solitum U727_0043425051 I 0.000