Bra018817 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra018817 T081926_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.788 0.826
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.788 0.783
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.781 0.783
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.781 0.783
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.781 0.783
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.776 0.761
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.776 0.761
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.775 0.739
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.775 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra018817.1-P C2H2 ZF 185 207
Bra018817.1-P C2H2 ZF 238 260

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
16040_YML099C Saccharomyces mikatae 16040_YML099C I 0.000
17710_YML099C Saccharomyces paradoxus 17710_YML099C I 0.000
18194_YML099C Saccharomyces bayanus 18194_YML099C I 0.000
AACERI_AaceriAAL175W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAL175W I 0.000
AGOS_AAL175W Ashbya gossypii AGOS_AAL175W I 0.000
CaO19.10262 Candida albicans CaO19.10262 I 0.000
CaO19.2748 Candida albicans CaO19.2748 I 0.000
CD36_42420 Candida dubliniensis CD36_42420 I 0.000
CORT_0E00270 Candida orthopsilosis CORT_0E00270 I 0.000
CPAG_00315 Candida parapsilosis CPAG_00315 I 0.000
CTRG_00138 Candida tropicalis CTRG_00138 I 0.000
DEHA2E16302g Debaryomyces hansenii DEHA2E16302g I 0.000
Ecym_8159 Eremothecium cymbalariae Ecym_8159 I 0.000
G210_1017 Candida maltosa G210_1017 I 0.000
GNLVRS01_PISO0M20692g Millerozyma farinosa GNLVRS01_PISO0M20692g I 0.000
GNLVRS01_PISO0N20935g Millerozyma farinosa GNLVRS01_PISO0N20935g I 0.000
KAFR_0L02130 Kazachstania africana KAFR_0L02130 I 0.000
KLLA0_D10197g Kluyveromyces lactis KLLA0_D10197g I 0.000
KLTH0E16500g Lachancea thermotolerans KLTH0E16500g I 0.000
KLTH0E16500g Kluyveromyces thermotolerans KLTH0E16500g I 0.000
KNAG_0J00210 Kazachstania naganishii KNAG_0J00210 I 0.000
Kpol_538p52 Vanderwaltozyma polyspora Kpol_538p52 I 0.000
Kwal_9688 Kluyveromyces waltii Kwal_9688 I 0.000
LALA0_S01e00826g Lachancea lanzarotensis LALA0_S01e00826g I 0.000
LELG_04177 Lodderomyces elongisporus LELG_04177 I 0.000
NCAS_0C00220 Naumovozyma castellii NCAS_0C00220 I 0.000
NDAI_0K00150 Naumovozyma dairenensis NDAI_0K00150 I 0.000
PGUG_03209 Candida guilliermondii PGUG_03209 I 0.000
PGUG_03209 Meyerozyma guilliermondii PGUG_03209 I 0.000
PICST_51603 Scheffersomyces stipitis PICST_51603 I 0.000
SAKL0D00264g Lachancea kluyveri SAKL0D00264g I 0.000
Scas_Contig626.6 Saccharomyces castellii Scas_Contig626.6 I 0.000
SKUD_195006 Saccharomyces kudriavzevii SKUD_195006 I 0.000
SPAPADRAFT_69629 Spathaspora passalidarum SPAPADRAFT_69629 I 0.000
SU7_2431 Saccharomyces arboricola SU7_2431 I 0.000
TDEL_0B00480 Torulaspora delbrueckii TDEL_0B00480 I 0.000
TRIATDRAFT_141953 Trichoderma atroviride TRIATDRAFT_141953 I 0.000
YALI0_D09647g Yarrowia lipolytica YALI0_D09647g I 0.000
ARG81 Saccharomyces cerevisiae YML099C D 0.000
ZBAI_03002 Zygosaccharomyces bailii ZBAI_03002 I 0.000
ZBAI_08687 Zygosaccharomyces bailii ZBAI_08687 I 0.000
ZYRO0A00440g Zygosaccharomyces rouxii ZYRO0A00440g I 0.000