ZIC1 (Bos taurus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSBTAG00000014751 T087897_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Zic1
M00137_2.00 		Mus musculus
NCMYVBNGNK
MNCNVBRKGN		 PBM
Badis et al.(2009)
Zic1_0991 		0.823 0.991
ZIC1
M02893_2.00 		Homo sapiens
KRCCCCCYGCTGYG
CRCAGCRGGGGGYM		 SELEX
Jolma et al.(2013)
ZIC1_1 		0.823 0.991
ZIC1
M04485_2.00 		Homo sapiens
BVCCMCCYGYHGYGH
DCRCDRCRGGKGGBV		 SELEX
Yin et al.(2017)
ZIC1_eDBD_HT-SELEX 		0.823 0.991
ZIC1
M04487_2.00 		Homo sapiens
BVCCCCCYGCTGYGH
DCRCAGCRGGGGGBV		 SELEX
Yin et al.(2017)
ZIC1_FL_HT-SELEX 		0.823 0.991
ZIC1
M08900_2.00 		Homo sapiens
BMSCHCCCM
KGGGDGSKV		 Misc
Kulakovskiy et al.(2013)
ZIC1_HUMAN.H11MO.0.B 		0.823 0.991
Zic1
M08990_2.00 		Mus musculus
BMSCHCCCM
KGGGDGSKV		 Misc
Kulakovskiy et al.(2013)
ZIC1_MOUSE.H11MO.0.B 		0.823 0.991
ZIC1
M10226_2.00 		Homo sapiens
KRCNMMCYV
BRGKKNGTM		 Transfac
Matys et al.(2006)
V$ZIC1_01 		0.823 0.991
ZIC1
M10227_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZIC1_Q2 		0.823 0.991
ZIC1
M04486_2.00 		Homo sapiens
BACCCCCYRCTGTGM
KCACAGYRGGGGGTV		 SELEX
Yin et al.(2017)
ZIC1_eDBD_Methyl-HT-SELEX 		0.823 0.991
ZIC1
M04488_2.00 		Homo sapiens
BRCCCCCTGCTGTGH
DCACAGCAGGGGGYV		 SELEX
Yin et al.(2017)
ZIC1_FL_Methyl-HT-SELEX 		0.823 0.991
Zic2
M00150_2.00 		Mus musculus
NCMYVYNRNN
NNYNRBRKGN		 PBM
Badis et al.(2009)
Zic2_2895 		0.800 0.964
ZIC2
M08233_2.00 		Homo sapiens
BBCCTGCWGNB
VNCWGCAGGVV		 ChIP-seq
Najafabadi et al.(2015b)
ZIC2 		0.800 0.964
Zic2
M09011_2.00 		Mus musculus
NRMYHCCTGCTGDGH
DCHCAGCAGGDRKYN		 Misc
Kulakovskiy et al.(2013)
ZIC2_MOUSE.H11MO.0.C 		0.800 0.964
ZIC2
M10107_2.00 		Homo sapiens
VACCMCCCH
DGGGKGGTB		 Transfac
Matys et al.(2006)
V$ZIC2_01 		0.800 0.964
ZIC4
M02912_2.00 		Homo sapiens
KRCCCCCYGYDGNGH
DCNCHRCRGGGGGYM		 SELEX
Jolma et al.(2013)
ZIC4_1 		0.797 0.911
ZIC4
M04566_2.00 		Homo sapiens
BVCMHCMYRYNRYGH
DCRYNRYRKGDKGBV		 SELEX
Yin et al.(2017)
ZIC4_eDBD_HT-SELEX 		0.797 0.911
ZIC4
M04567_2.00 		Homo sapiens
BRCCHCCYRYBGTKH
DMACVRYRGGDGGYV		 SELEX
Yin et al.(2017)
ZIC4_eDBD_Methyl-HT-SELEX 		0.797 0.911
Zic3
M00151_2.00 		Mus musculus
NCMYVBNRNB
VNYNVBRKGN		 PBM
Badis et al.(2009)
Zic3_3119 		0.795 0.911
ZIC3
M02894_2.00 		Homo sapiens
BACCCCCYGCKGYGH
DCRCMGCRGGGGGTV		 SELEX
Jolma et al.(2013)
ZIC3_1 		0.795 0.911
Zic3
M02936_2.00 		Mus musculus
KRCCCCCYGCTGYGH
DCRCAGCRGGGGGYM		 SELEX
Jolma et al.(2013)
Zic3_1 		0.795 0.911
ZIC3
M04491_2.00 		Homo sapiens
VGACCCCCYGCTGTGM
KCACAGCRGGGGGTCB		 SELEX
Yin et al.(2017)
ZIC3_eDBD_HT-SELEX 		0.795 0.911
ZIC3
M04493_2.00 		Homo sapiens
BACCCCCYGCTGYGH
DCRCAGCRGGGGGTV		 SELEX
Yin et al.(2017)
ZIC3_FL_HT-SELEX 		0.795 0.911
ZIC3
M08902_2.00 		Homo sapiens
NVVYHCCTGCTGDGN
NCHCAGCAGGDRBBN		 Misc
Kulakovskiy et al.(2013)
ZIC3_HUMAN.H11MO.0.B 		0.795 0.911
Zic3
M09013_2.00 		Mus musculus
NVVYHCCTGCTGDGN
NCHCAGCAGGDRBBN		 Misc
Kulakovskiy et al.(2013)
ZIC3_MOUSE.H11MO.0.A 		0.795 0.911
ZIC3
M10229_2.00 		Homo sapiens
VRBCMCCCN
NGGGKGVYB		 Transfac
Matys et al.(2006)
V$ZIC3_01 		0.795 0.911
Zic3
M10359_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZIC3_07 		0.795 0.911
ZIC3
M04492_2.00 		Homo sapiens
NKACCCCCTGCTGTGM
KCACAGCAGGGGGTMN		 SELEX
Yin et al.(2017)
ZIC3_eDBD_Methyl-HT-SELEX 		0.795 0.911
ZIC3
M04494_2.00 		Homo sapiens
BRCCCCCTGCTGTGM
KCACAGCAGGGGGYV		 SELEX
Yin et al.(2017)
ZIC3_FL_Methyl-HT-SELEX 		0.795 0.911
Zic5
M00780_2.00 		Mus musculus
BRCCCCCYDS
SHRGGGGGYV		 PBM
Weirauch et al.(2013)
pTH2818 		0.769 0.893
ZIC5
M04471_2.00 		Homo sapiens
NKACCCCCCGCTGHGH
DCDCAGCGGGGGGTMN		 SELEX
Yin et al.(2017)
ZIC5_eDBD_HT-SELEX 		0.759 0.884
ZIC5
M04472_2.00 		Homo sapiens
NKACCCCCYGCTGTGM
KCACAGCRGGGGGTMN		 SELEX
Yin et al.(2017)
ZIC5_eDBD_Methyl-HT-SELEX 		0.759 0.884
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000019626 C2H2 ZF 240 260
ENSBTAP00000019626 C2H2 ZF 269 296
ENSBTAP00000019626 C2H2 ZF 302 326
ENSBTAP00000019626 C2H2 ZF 332 356
ENSBTAP00000019626 C2H2 ZF 362 385

Links

Other C2H2 ZF family TFs
Other Bos taurus TFs

259 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
7640 Aureococcus anophagefferens 7640 I 0.000
Aan_R007409 Calypte anna Aan_R007409 I 0.000
Aan_R013725 Calypte anna Aan_R013725 I 0.000
Afo_R001855 Aptenodytes forsteri Afo_R001855 I 0.000
Afo_R010573 Aptenodytes forsteri Afo_R010573 I 0.000
Alligator_sinensis_CCG016830.1 Alligator sinensis Alligator_sinensis_CCG016830.1 I 0.000
E2FA Arabidopsis thaliana AT2G36010 D 0.000
Bm6651 Brugia malayi Bm6651 I 0.000
Brh_R002393 Buceros rhinoceros Brh_R002393 I 0.000
Brh_R008700 Buceros rhinoceros Brh_R008700 I 0.000
CAD25164 Encephalitozoon cuniculi CAD25164 I 0.000
cassava9777.m1 Manihot esculenta cassava9777.m1 I 0.000
CBG18599 Caenorhabditis briggsae CBG18599 I 0.000
CBG20784 Caenorhabditis briggsae CBG20784 I 0.000
CGOC_0000263101 Cylicostephanus goldi CGOC_0000263101 I 0.000
Ciclev10011632m.g Citrus clementina Ciclev10011632m.g I 0.000
CJA12509 Caenorhabditis japonica CJA12509 I 0.000
CRE19082 Caenorhabditis remanei CRE19082 I 0.000
D917_10139 Trichinella nativa D917_10139 I 0.000
DAPPUDRAFT_52662 Daphnia pulex DAPPUDRAFT_52662 I 0.000
DAPPUDRAFT_71618 Daphnia pulex DAPPUDRAFT_71618 I 0.000
EBI_21994 Enterocytozoon bieneusi EBI_21994 I 0.000
EFV59050 Trichinella spiralis EFV59050 I 0.000
EHEL_021280 Encephalitozoon hellem EHEL_021280 I 0.000
Eint_021310 Encephalitozoon intestinalis Eint_021310 I 0.000
E2F5 Anolis carolinensis ENSACAG00000014098 I 0.000
ENSAMXG00000006006 Astyanax mexicanus ENSAMXG00000006006 I 0.000
ENSAPLG00000005664 Anas platyrhynchos ENSAPLG00000005664 I 0.000
ENSAPLG00000016108 Anas platyrhynchos ENSAPLG00000016108 I 0.000
E2F5 Bos taurus ENSBTAG00000009378 I 0.000
E2F5 Canis familiaris ENSCAFG00000008628 I 0.000
E2F5 Callithrix jacchus ENSCJAG00000000387 I 0.000
E2F6 Callithrix jacchus ENSCJAG00000006910 I 0.000
ENSCPOG00000026476 Cavia porcellus ENSCPOG00000026476 I 0.000
ENSDNOG00000034477 Dasypus novemcinctus ENSDNOG00000034477 I 0.000
E2f5 Dipodomys ordii ENSDORG00000011212 I 0.000
E2F5 Equus caballus ENSECAG00000013766 I 0.000
E2F1 Erinaceus europaeus ENSEEUG00000009987 I 0.000
E2F5 Erinaceus europaeus ENSEEUG00000014470 I 0.000
ENSFALG00000004897 Ficedula albicollis ENSFALG00000004897 I 0.000
E2F4 Felis catus ENSFCAG00000009268 I 0.000
E2F6 Homo sapiens ENSG00000169016 D 0.000
ENSMEUG00000002631 Macropus eugenii ENSMEUG00000002631 I 0.000
ENSMEUG00000012534 Macropus eugenii ENSMEUG00000012534 I 0.000
ENSMGAG00000002385 Meleagris gallopavo ENSMGAG00000002385 I 0.000
E2F5 Meleagris gallopavo ENSMGAG00000011709 I 0.000
E2F5 Microcebus murinus ENSMICG00000003567 I 0.000
E2F6 Macaca mulatta ENSMMUG00000023225 I 0.000
ENSMMUP00000008413 Macaca fascicularis ENSMMUP00000008413 I 0.000
ENSMPUG00000010751 Mustela putorius furo ENSMPUG00000010751 I 0.000
ENSNLEG00000004342 Nomascus leucogenys ENSNLEG00000004342 I 0.000
ENSOARG00000013715 Ovis aries ENSOARG00000013715 I 0.000
e2f5 Oryzias latipes ENSORLG00000017919 I 0.000
ENSP00000256117-D1 Bos grunniens ENSP00000256117-D1 I 0.000
ENSPMAG00000000488 Petromyzon marinus ENSPMAG00000000488 I 0.000
ENSPSIG00000009614 Pelodiscus sinensis ENSPSIG00000009614 I 0.000
ENSPSIG00000015377 Pelodiscus sinensis ENSPSIG00000015377 I 0.000
E2F5 Sorex araneus ENSSARG00000012960 I 0.000
ENSSHAG00000011240 Sarcophilus harrisii ENSSHAG00000011240 I 0.000
ENSSHAG00000011293 Sarcophilus harrisii ENSSHAG00000011293 I 0.000
ENSSTOG00000013339 Ictidomys tridecemlineatus ENSSTOG00000013339 I 0.000
e2f5 Takifugu rubripes ENSTRUG00000002354 I 0.000
ENSTSYG00000014083 Tarsius syrichta ENSTSYG00000014083 I 0.000
E2F5 Vicugna pacos ENSVPAG00000003343 I 0.000
EROM_021260 Encephalitozoon romaleae EROM_021260 I 0.000
estExt_fgenesh1_pg.C_1330005 Phytophthora capsici estExt_fgenesh1_pg.C_1330005 I 0.000
EVEC_0000755101 Enterobius vermicularis EVEC_0000755101 I 0.000
e_gw1.10.89.1 Volvox carteri e_gw1.10.89.1 I 0.000
e_gw1.2.455.1 Phytophthora capsici e_gw1.2.455.1 I 0.000
F443_00888 Phytophthora parasitica F443_00888 I 0.000
fgenesh_masked-par_contig_1752-abinit-gene-0.19 Pythium arrhenomanes fgenesh_masked-par_contig_1752-abinit-gene-0.19 I 0.000
fgenesh_scip_prom.28083.5694 Phytophthora lateralis fgenesh_scip_prom.28083.5694 I 0.000
fgenesh_scip_prom.46568.2153 Phytophthora kernoviae fgenesh_scip_prom.46568.2153 I 0.000
Gfo_R014499 Geospiza fortis Gfo_R014499 I 0.000
Gfo_R016024 Geospiza fortis Gfo_R016024 I 0.000
GLOINDRAFT_4310 Rhizophagus irregularis GLOINDRAFT_4310 I 0.000
GPUH_0001886201 Gongylonema pulchrum GPUH_0001886201 I 0.000
GRMZM2G351232 Zea mays GRMZM2G351232 I 0.000
GRMZM2G404769 Zea mays GRMZM2G404769 I 0.000
GSPATT00020286001 Paramecium tetraurelia GSPATT00020286001 D 0.000
GSPATT00021123001 Paramecium tetraurelia GSPATT00021123001 I 0.000
GSPATT00023028001 Paramecium tetraurelia GSPATT00023028001 I 0.000
GSPATT00023524001 Paramecium tetraurelia GSPATT00023524001 I 0.000
GUITHDRAFT_81084 Guillardia theta GUITHDRAFT_81084 I 0.000
ISCW000457 Ixodes scapularis ISCW000457 I 0.000
L596_g3361 Steinernema carpocapsae L596_g3361 I 0.000
L889_g4761 Steinernema feltiae L889_g4761 I 0.000
L892_g31325 Steinernema scapterisci L892_g31325 I 0.000
L893_g15895 Steinernema glaseri L893_g15895 I 0.000
L898_g29355 Steinernema monticolum L898_g29355 I 0.000
LLOJ009146 Lutzomyia longipalpis LLOJ009146 I 0.000
LPERR02G15580 Leersia perrieri LPERR02G15580 I 0.000
M896_021310 Ordospora colligata M896_021310 I 0.000
maker-nMf.1.1.scaf01158-augustus-gene-0.14 Meloidogyne floridensis maker-nMf.1.1.scaf01158-augustus-gene-0.14 I 0.000
maker-pir_contig_77-snap-gene-0.27 Pythium irregulare maker-pir_contig_77-snap-gene-0.27 I 0.000
maker-piw_contig_136-snap-gene-0.25 Pythium iwayamai maker-piw_contig_136-snap-gene-0.25 I 0.000
MhA1_Contig1067.frz3.gene1 Meloidogyne hapla MhA1_Contig1067.frz3.gene1 I 0.000
NCER_100500 Nosema ceranae NCER_100500 I 0.000
nDi.2.2.2.g03084 Dirofilaria immitis nDi.2.2.2.g03084 I 0.000
NEMVEDRAFT_v1g245401 Nematostella vectensis NEMVEDRAFT_v1g245401 I 0.000
OBART04G12180 Oryza barthii OBART04G12180 I 0.000
OGLUM04G11850 Oryza glumaepatula OGLUM04G11850 I 0.000
orange1.1g015878m.g Citrus sinensis orange1.1g015878m.g I 0.000
Phyra53344 Phytophthora ramorum Phyra53344 I 0.000
Physo155323 Phytophthora sojae Physo155323 I 0.000
PITG_01579 Phytophthora infestans PITG_01579 I 0.000
PK10965.1 Cannabis sativa PK10965.1 I 0.000
XM_002307678.1 Populus trichocarpa POPTR_0005s25930 I 0.000
Pvit_05435 Pogona vitticeps Pvit_05435 I 0.000
RO3G_12705 Rhizopus oryzae RO3G_12705 I 0.000
SMUV_0000815601 Syphacia muris SMUV_0000815601 I 0.000
SVUK_0001099801 Strongylus vulgaris SVUK_0001099801 I 0.000
Tal_R001534 Tyto alba Tal_R001534 I 0.000
Tal_R005486 Tyto alba Tal_R005486 I 0.000
tetur28g01610 Tetranychus urticae tetur28g01610 I 0.000
TTHERM_01099150 Tetrahymena thermophila TTHERM_01099150 I 0.000
VCUG_01062 Vavraia culicis VCUG_01062 I 0.000
VICG_01356 Vittaforma corneae VICG_01356 I 0.000
efl-1 Caenorhabditis elegans WBGene00001161 D 0.000