CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PRDM4
(
Canis familiaris
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSCAFG00000001788
T088219_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM4
M02881_2.00
Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA
SELEX
Jolma et al.(2013)
PRDM4_1
0.827
1.000
PRDM4
M04421_2.00
Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX
0.827
1.000
PRDM4
M04422_2.00
Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1
0.827
1.000
PRDM4
M04423_2.00
Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000002598
C2H2 ZF
590
612
WKCSMCPQAFISPSKLHVHFMGH
ENSCAFP00000002598
C2H2 ZF
618
640
HKCDFCSKAFSDPSNLRTHLKIH
ENSCAFP00000002598
C2H2 ZF
646
668
YRCTLCDKSFTQKAHLESHMVIH
ENSCAFP00000002598
C2H2 ZF
674
696
LKCDYCDKLFMRRQDLKQHVLIH
ENSCAFP00000002598
C2H2 ZF
702
724
IKCPKCDKLFLRTNHLKKHLNSH
ENSCAFP00000002598
C2H2 ZF
730
751
YVCEKCTKAYLTKYHLTRHLKT
ENSCAFP00000040587
C2H2 ZF
590
612
WKCSMCPQAFISPSKLHVHFMGH
ENSCAFP00000040587
C2H2 ZF
618
640
HKCDFCSKAFSDPSNLRTHLKIH
ENSCAFP00000040587
C2H2 ZF
646
668
YRCTLCDKSFTQKAHLESHMVIH
ENSCAFP00000040587
C2H2 ZF
674
696
LKCDYCDKLFMRRQDLKQHVLIH
ENSCAFP00000040587
C2H2 ZF
702
724
IKCPKCDKLFLRTNHLKKHLNSH
ENSCAFP00000040587
C2H2 ZF
730
751
YVCEKCTKAYLTKYHLTRHLKT
Links
Other
C2H2 ZF
family TFs
Other
Canis familiaris
TFs
54 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CCM_07676
Cordyceps militaris
CCM_07676
N
0.000
estExt_Genewise1.C_42033
Cryphonectria parasitica
estExt_Genewise1.C_42033
N
0.000
FOXG_14560
Fusarium oxysporum
FOXG_14560
N
0.000
MAC_07656
Metarhizium acridum
MAC_07656
N
0.000
MBR_00024
Metarhizium brunneum
MBR_00024
N
0.000
MGU_09181
Metarhizium guizhouense
MGU_09181
N
0.000
TRIATDRAFT_164285
Trichoderma atroviride
TRIATDRAFT_164285
N
0.000
TRIREDRAFT_104104
Trichoderma reesei
TRIREDRAFT_104104
N
0.000
TRIREDRAFT_109328
Trichoderma reesei
TRIREDRAFT_109328
N
0.000
TRIVIDRAFT_125398
Trichoderma virens
TRIVIDRAFT_125398
N
0.000
TRIVIDRAFT_133633
Trichoderma virens
TRIVIDRAFT_133633
N
0.000
VDAG_07288
Verticillium dahliae
VDAG_07288
N
0.000
VDBG_09138
Verticillium albo atrum
VDBG_09138
N
0.000
VDBG_09138
Verticillium alfalfae
VDBG_09138
N
0.000
X797_009923
Metarhizium robertsii
X797_009923
N
0.000