PRDM4 (Canis familiaris)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCAFG00000001788 T088219_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PRDM4
M02881_2.00
Homo sapiens
TTTCAAGGCCCCC

GGGGGCCTTGAAA
SELEX
Jolma et al.(2013)
PRDM4_1
0.827 1.000
PRDM4
M04421_2.00
Homo sapiens
YRRCNGTTTCAAGKCYMCCC

GGGKRGMCTTGAAACNGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX
0.827 1.000
PRDM4
M04422_2.00
Homo sapiens
YRGCRGTTTCRAGGSTTVCC

GGBAASCCTYGAAACYGCYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1
0.827 1.000
PRDM4
M04423_2.00
Homo sapiens
YRRCRGTTTCRAGKSYNCCC

GGGNRSMCTYGAAACYGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2
0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000002598 C2H2 ZF 590 612
ENSCAFP00000002598 C2H2 ZF 618 640
ENSCAFP00000002598 C2H2 ZF 646 668
ENSCAFP00000002598 C2H2 ZF 674 696
ENSCAFP00000002598 C2H2 ZF 702 724
ENSCAFP00000002598 C2H2 ZF 730 751
ENSCAFP00000040587 C2H2 ZF 590 612
ENSCAFP00000040587 C2H2 ZF 618 640
ENSCAFP00000040587 C2H2 ZF 646 668
ENSCAFP00000040587 C2H2 ZF 674 696
ENSCAFP00000040587 C2H2 ZF 702 724
ENSCAFP00000040587 C2H2 ZF 730 751

Links

Other C2H2 ZF family TFs
Other Canis familiaris TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CCM_07676 Cordyceps militaris CCM_07676 N 0.000
estExt_Genewise1.C_42033 Cryphonectria parasitica estExt_Genewise1.C_42033 N 0.000
FOXG_14560 Fusarium oxysporum FOXG_14560 N 0.000
MAC_07656 Metarhizium acridum MAC_07656 N 0.000
MBR_00024 Metarhizium brunneum MBR_00024 N 0.000
MGU_09181 Metarhizium guizhouense MGU_09181 N 0.000
TRIATDRAFT_164285 Trichoderma atroviride TRIATDRAFT_164285 N 0.000
TRIREDRAFT_104104 Trichoderma reesei TRIREDRAFT_104104 N 0.000
TRIREDRAFT_109328 Trichoderma reesei TRIREDRAFT_109328 N 0.000
TRIVIDRAFT_125398 Trichoderma virens TRIVIDRAFT_125398 N 0.000
TRIVIDRAFT_133633 Trichoderma virens TRIVIDRAFT_133633 N 0.000
VDAG_07288 Verticillium dahliae VDAG_07288 N 0.000
VDBG_09138 Verticillium albo atrum VDBG_09138 N 0.000
VDBG_09138 Verticillium alfalfae VDBG_09138 N 0.000
X797_009923 Metarhizium robertsii X797_009923 N 0.000