macho1 (Ciona intestinalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCING00000007968 T089088_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.773 0.880
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.773 0.880
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.773 0.880
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.773 0.880
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.773 0.880
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000016294 C2H2 ZF 183 210
ENSCINP00000016294 C2H2 ZF 216 240
ENSCINP00000016294 C2H2 ZF 246 270
ENSCINP00000016294 C2H2 ZF 276 300

Links

Other C2H2 ZF family TFs
Other Ciona intestinalis TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00110p00030150 Amborella trichopoda AMTR_s00110p00030150 I
BGIOSGA017139 Oryza indica BGIOSGA017139 N
Bra000283 Brassica rapa Bra000283 I
BRADI5G21950 Brachypodium distachyon BRADI5G21950 N
Cla018863 Citrullus lanatus Cla018863 I
Cucsa.113040 Cucumis sativus Cucsa.113040 I
estExt_fgenesh1_pg.C_680048 Physcomitrella patens estExt_fgenesh1_pg.C_680048 I
estExt_fgenesh1_pg.C_690022 Physcomitrella patens estExt_fgenesh1_pg.C_690022 I
e_gw1.84.236.1 Physcomitrella patens e_gw1.84.236.1 I
F775_31091 Aegilops tauschii F775_31091 N
GLYMA02G45150 Glycine max GLYMA02G45150 I
GLYMA14G03600 Glycine max GLYMA14G03600 I
GRMZM2G042920 Zea mays GRMZM2G042920 N
GRMZM2G080054 Zea mays GRMZM2G080054 N
gw1.147.92.1 Physcomitrella patens gw1.147.92.1 I
Lus10020727.g Linum usitatissimum Lus10020727.g I
Lus10029805.g Linum usitatissimum Lus10029805.g I
MLOC_36345 Hordeum vulgare MLOC_36345 N
OBART04G25920 Oryza barthii OBART04G25920 N
OGLUM04G25420 Oryza glumaepatula OGLUM04G25420 N
OMERI04G21140 Oryza meridionalis OMERI04G21140 N
ONIVA04G24530 Oryza nivara ONIVA04G24530 N
OPUNC04G23010 Oryza punctata OPUNC04G23010 N
ORGLA04G0225800 Oryza glaberrima ORGLA04G0225800 N
ORUFI04G27110 Oryza rufipogon ORUFI04G27110 N
OS04G0618600 Oryza sativa OS04G0618600 N
Pavir.Gb00491 Panicum virgatum Pavir.Gb00491 N
Pavir.J18207 Panicum virgatum Pavir.J18207 N
Sb06g028750 Sorghum bicolor Sb06g028750 N
SELMODRAFT_114141 Selaginella moellendorffii SELMODRAFT_114141 I
SELMODRAFT_116654 Selaginella moellendorffii SELMODRAFT_116654 I
SELMODRAFT_118904 Selaginella moellendorffii SELMODRAFT_118904 I
SELMODRAFT_29179 Selaginella moellendorffii SELMODRAFT_29179 I
SELMODRAFT_39143 Selaginella moellendorffii SELMODRAFT_39143 I
Si011759m.g Setaria italica Si011759m.g N
Traes_2AL_67BC3AFBE Triticum aestivum Traes_2AL_67BC3AFBE N
Traes_2BL_A1F9C66CA Triticum aestivum Traes_2BL_A1F9C66CA N
Traes_2DL_0B1444B68 Triticum aestivum Traes_2DL_0B1444B68 N
Traes_2DL_46C827FAC Triticum aestivum Traes_2DL_46C827FAC N
Traes_2DL_46C827FAC1 Triticum aestivum Traes_2DL_46C827FAC1 N
TRIUR3_18209 Triticum urartu TRIUR3_18209 N