CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSCSAVG00000001907 *(Ciona savignyi)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	ENSCSAVG00000001907	T090717_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
opa M03668_2.00	Drosophila melanogaster	BVCCCCCCRYNGHB	VDCNRYGGGGGGBV	SELEX Nitta et al.(2015) opa_1	0.773	0.880
opa M05861_2.00	Drosophila melanogaster	VCCCCCCRYNGNK	MNCNRYGGGGGGB	SMiLE-seq Isakova et al.(2017) Opa	0.773	0.880
opa M06468_2.00	Drosophila melanogaster	GMCCCCCCGCDG	CHGCGGGGGGKC	B1H Mathelier et al.(2014) MA0456.1	0.773	0.880
opa M06062_2.00	Drosophila melanogaster	GMCCCCCCRCDG	CHGYGGGGGGKC	B1H Zhu et al.(2011) opa_NAR_FBgn0003002	0.773	0.880
opa M06063_2.00	Drosophila melanogaster	MKVMMCCCCMCYR	YRGKGGGGKKBMK	B1H Zhu et al.(2011) Opa_SANGER_5_FBgn0003002	0.773	0.880
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSCSAVP00000003207	C2H2 ZF	182	209	HACYWQDCSRENKPFKAKYKLINHIRVH
ENSCSAVP00000003207	C2H2 ZF	215	239	FQCPYPGCGKVFARSENLKIHKRTH
ENSCSAVP00000003207	C2H2 ZF	245	269	FCCEFSGCNRRFANSSDRKKHTHVH
ENSCSAVP00000003207	C2H2 ZF	275	299	YLCKVYGCEKSYTHPSSLRKHMKVH

Links
Other C2H2 ZF family TFs
Other *Ciona savignyi* TFs