CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSLACG00000009833 *(Latimeria chalumnae)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	ENSLACG00000009833	T097056_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
CTCF M08238_2.00	Homo sapiens	GCGCCCYCTGSYGGY	RCCRSCAGRGGGCGC	ChIP-seq Najafabadi et al.(2015b) CTCF	0.823	0.988
CTCF M02878_2.00	Homo sapiens	WGCGCCMYCTAGYGGYV	BRCCRCTAGRKGGCGCW	SELEX Jolma et al.(2013) CTCF_1	0.823	0.984
CTCF M05846_2.00	Homo sapiens	NNNNHBNVCKCCCCCHD	HDGGGGGMGBNVDNNNN	SMiLE-seq Isakova et al.(2017) CTCF	0.823	0.984
CTCF M08289_2.00	Homo sapiens	VGCGCCMCCTVSHGG	CCDSBAGGKGGCGCB	ChIP-seq Schmitges et al.(2016) P49711_3-7.RCADE	0.823	0.984
CTCF M07550_2.00	Homo sapiens	SYGCCMYCTDSTGGH	DCCASHAGRKGGCRS	ChIP-exo Rhee et al.(2011) CTCF_1	0.823	0.984
CTCF M07551_2.00	Homo sapiens	YTTTTDTTTTT	AAAAAHAAAAR	ChIP-exo Rhee et al.(2011) CTCF_2	0.823	0.984
CTCF M07552_2.00	Homo sapiens	AVACAGARDTCCHYTSTGT	ACASARDGGAHYTCTGTBT	ChIP-exo Rhee et al.(2011) CTCF_3	0.823	0.984
CTCF M08087_2.00	Homo sapiens	BRSYGCCMYCTRSTGGYNR	YNRCCASYAGRKGGCRSYV	ChIP-seq Mathelier et al.(2014) MA0139.1	0.823	0.984
CTCF M07862_2.00	Homo sapiens	VBRSYGCCMYCTRSYGGHNVN	NBNDCCRSYAGRKGGCRSYVB	ChIP-seq Gerstein et al.(2012) A549_CTCF_HudsonAlpha	0.823	0.984
CTCF M07863_2.00	Homo sapiens	BRSYGCCMYCTRSYGG	CCRSYAGRKGGCRSYV	ChIP-seq Gerstein et al.(2012) AG04449_CTCF_UW	0.823	0.984
CTCF M07864_2.00	Homo sapiens	RSYGCCMYCTRSTGG	CCASYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) AG04450_CTCF_UW	0.823	0.984
CTCF M07865_2.00	Homo sapiens	VBRSYGCCMYCTRSTG	CASYAGRKGGCRSYVB	ChIP-seq Gerstein et al.(2012) AG09309_CTCF_UW	0.823	0.984
CTCF M07866_2.00	Homo sapiens	SYGCCMYCTRSTGGY	RCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) AG09319_CTCF_UW	0.823	0.984
CTCF M07867_2.00	Homo sapiens	GCCMYCTDSTGGH	DCCASHAGRKGGC	ChIP-seq Gerstein et al.(2012) AG10803_CTCF_UW	0.823	0.984
CTCF M07868_2.00	Homo sapiens	SYGCCMYCTRSTGGY	RCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) AoAF_CTCF_UW	0.823	0.984
CTCF M07869_2.00	Homo sapiens	SYGCCMYCTRSYGGY	RCCRSYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) BJ_CTCF_UW	0.823	0.984
CTCF M07870_2.00	Homo sapiens	SYGCCMYCTRSTGGY	RCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) Caco-2_CTCF_UW	0.823	0.984
CTCF M07871_2.00	Homo sapiens	GCCMYCTRSTGGYVR	YBRCCASYAGRKGGC	ChIP-seq Gerstein et al.(2012) Fibrobl_CTCF_UT-A	0.823	0.984
CTCF M07872_2.00	Homo sapiens	RSYGCCMYCTRSTGG	CCASYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) Gliobla_CTCF_UT-A	0.823	0.984
CTCF M07873_2.00	Homo sapiens	BNNBRSYGCCMYCTRSYGGYN	NRCCRSYAGRKGGCRSYVNNV	ChIP-seq Gerstein et al.(2012) GM06990_CTCF_UW	0.823	0.984
CTCF M07874_2.00	Homo sapiens	RSYGCCMYCTRSYGG	CCRSYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) GM12864_CTCF_UW	0.823	0.984
CTCF M07875_2.00	Homo sapiens	SYGCCMYCTRSYGGY	RCCRSYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) GM12865_CTCF_UW	0.823	0.984
CTCF M07876_2.00	Homo sapiens	SYGCCMYCTRSYGGY	RCCRSYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) GM12872_CTCF_UW	0.823	0.984
CTCF M07877_2.00	Homo sapiens	RSYGCCMYCTRSYGG	CCRSYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) GM12873_CTCF_UW	0.823	0.984
CTCF M07878_2.00	Homo sapiens	SYGCCMYCTRSYGGY	RCCRSYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) GM12874_CTCF_UW	0.823	0.984
CTCF M07879_2.00	Homo sapiens	SYGCCMYCTRSYGGY	RCCRSYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) GM12875_CTCF_UW	0.823	0.984
CTCF M07880_2.00	Homo sapiens	GCCMYCTRSTGGYNR	YNRCCASYAGRKGGC	ChIP-seq Gerstein et al.(2012) GM12878_CTCF_Broad	0.823	0.984
CTCF M07881_2.00	Homo sapiens	YGCCMYCTRSTGGHN	NDCCASYAGRKGGCR	ChIP-seq Gerstein et al.(2012) GM12878_CTCF_Stanford	0.823	0.984
CTCF M07882_2.00	Homo sapiens	YGCCMYCTRSTG	CASYAGRKGGCR	ChIP-seq Gerstein et al.(2012) GM12878_CTCF_UT-A	0.823	0.984
CTCF M07883_2.00	Homo sapiens	BRSYGCCMYCTRSTGGY	RCCASYAGRKGGCRSYV	ChIP-seq Gerstein et al.(2012) GM12878_CTCF_UW	0.823	0.984
CTCF M07884_2.00	Homo sapiens	SYGCCMYCTRSTGGH	DCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) H1-hESC_CTCF_Broad	0.823	0.984
CTCF M07885_2.00	Homo sapiens	SYGCCMYCTRSYGGH	DCCRSYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) H1-hESC_CTCF_HudsonAlpha	0.823	0.984
CTCF M07886_2.00	Homo sapiens	SYGCCMYCTRSTGGY	RCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) HA-sp_CTCF_UW	0.823	0.984
CTCF M07887_2.00	Homo sapiens	RSYGCCMYCTDSTGGYNR	YNRCCASHAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) HBMEC_CTCF_UW	0.823	0.984
CTCF M07888_2.00	Homo sapiens	YGCCMYCTRSTGGYN	NRCCASYAGRKGGCR	ChIP-seq Gerstein et al.(2012) HCFaa_CTCF_UW	0.823	0.984
CTCF M07889_2.00	Homo sapiens	YGCCMYCTDSTGGY	RCCASHAGRKGGCR	ChIP-seq Gerstein et al.(2012) HCPEpiC_CTCF_UW	0.823	0.984
CTCF M07890_2.00	Homo sapiens	YGCCMYCTRSTGG	CCASYAGRKGGCR	ChIP-seq Gerstein et al.(2012) HEEpiC_CTCF_UW	0.823	0.984
CTCF M07891_2.00	Homo sapiens	RSYGCCMYCTRSTGGYNR	YNRCCASYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) HEK293_CTCF_UW	0.823	0.984
CTCF M07892_2.00	Homo sapiens	DSYGCCMYCTRSTGG	CCASYAGRKGGCRSH	ChIP-seq Gerstein et al.(2012) HeLa-S3_CTCF_Broad	0.823	0.984
CTCF M07893_2.00	Homo sapiens	SYGCCMYCTRSTGGY	RCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) HeLa-S3_CTCF_UT-A	0.823	0.984
CTCF M07894_2.00	Homo sapiens	VBRSYGCCMYCTRSYGG	CCRSYAGRKGGCRSYVB	ChIP-seq Gerstein et al.(2012) HeLa-S3_CTCF_UW	0.823	0.984
CTCF M07895_2.00	Homo sapiens	VBRSYGCCMYCTRSTGGY	RCCASYAGRKGGCRSYVB	ChIP-seq Gerstein et al.(2012) HepG2_CTCF_Broad	0.823	0.984
CTCF M07896_2.00	Homo sapiens	RSYGCCMYCTRSTGG	CCASYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) HepG2_CTCF_HudsonAlpha	0.823	0.984
CTCF M07897_2.00	Homo sapiens	RSYGCCMYCTDSTGG	CCASHAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) HepG2_CTCF_UT-A	0.823	0.984
CTCF M07898_2.00	Homo sapiens	YGCCMYCTRSTGGY	RCCASYAGRKGGCR	ChIP-seq Gerstein et al.(2012) HepG2_CTCF_UW	0.823	0.984
CTCF M07899_2.00	Homo sapiens	VBRSYGCCMYCTRSTGGYNR	YNRCCASYAGRKGGCRSYVB	ChIP-seq Gerstein et al.(2012) HMEC_CTCF_Broad	0.823	0.984
CTCF M07900_2.00	Homo sapiens	VBRSYGCCMYCTRSTGG	CCASYAGRKGGCRSYVB	ChIP-seq Gerstein et al.(2012) HMEC_CTCF_UW	0.823	0.984
CTCF M07901_2.00	Homo sapiens	CCMYCTRSTGG	CCASYAGRKGG	ChIP-seq Gerstein et al.(2012) HMF_CTCF_UW	0.823	0.984
CTCF M07902_2.00	Homo sapiens	RSYGCCMYCTRSTGG	CCASYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) HPAF_CTCF_UW	0.823	0.984
CTCF M07903_2.00	Homo sapiens	YGCCMYCTDSTGG	CCASHAGRKGGCR	ChIP-seq Gerstein et al.(2012) HPF_CTCF_UW	0.823	0.984
CTCF M07904_2.00	Homo sapiens	SYGCCMYCTRSTGGY	RCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) HRE_CTCF_UW	0.823	0.984
CTCF M07905_2.00	Homo sapiens	YGCCMYCTRSTG	CASYAGRKGGCR	ChIP-seq Gerstein et al.(2012) HRPEpiC_CTCF_UW	0.823	0.984
CTCF M07906_2.00	Homo sapiens	NNBRSYGCCMYCTDSTGG	CCASHAGRKGGCRSYVNN	ChIP-seq Gerstein et al.(2012) HSMM_CTCF_Broad	0.823	0.984
CTCF M07907_2.00	Homo sapiens	BRSYGCCMYCTDSTGGYN	NRCCASHAGRKGGCRSYV	ChIP-seq Gerstein et al.(2012) HSMMtube_CTCF_Broad	0.823	0.984
CTCF M07908_2.00	Homo sapiens	NVBRSYGCCMYCTRSYGGYNV	BNRCCRSYAGRKGGCRSYVBN	ChIP-seq Gerstein et al.(2012) HUVEC_CTCF_Broad	0.823	0.984
CTCF M07909_2.00	Homo sapiens	RSYRCCMYCTRSTGG	CCASYAGRKGGYRSY	ChIP-seq Gerstein et al.(2012) HUVEC_CTCF_UT-A	0.823	0.984
CTCF M07910_2.00	Homo sapiens	BNVBRSYGCCMYCTRSYGGH	DCCRSYAGRKGGCRSYVBNV	ChIP-seq Gerstein et al.(2012) HUVEC_CTCF_UW	0.823	0.984
CTCF M07911_2.00	Homo sapiens	RSYGCCMYCTRSYGGYNR	YNRCCRSYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) K562_CTCF_Broad	0.823	0.984
CTCF M07912_2.00	Homo sapiens	SYGCCMYCTDSTGGY	RCCASHAGRKGGCRS	ChIP-seq Gerstein et al.(2012) K562_CTCF_UT-A	0.823	0.984
CTCF M07913_2.00	Homo sapiens	SYGCCMYCTRSYGGY	RCCRSYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) K562_CTCF_UW	0.823	0.984
CTCF M07914_2.00	Homo sapiens	SYGCCMYCTRSTGGH	DCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) MCF-7_CTCF_UT-A	0.823	0.984
CTCF M07915_2.00	Homo sapiens	BRSYGCCMYCTDSTGGYNRNN	NNYNRCCASHAGRKGGCRSYV	ChIP-seq Gerstein et al.(2012) NH-A_CTCF_Broad	0.823	0.984
CTCF M07916_2.00	Homo sapiens	BRSYGCCMYCTDSTGGY	RCCASHAGRKGGCRSYV	ChIP-seq Gerstein et al.(2012) NHDF-Ad_CTCF_Broad	0.823	0.984
CTCF M07917_2.00	Homo sapiens	SYGCCMYCTRSTGGH	DCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) NHEK_CTCF_Broad	0.823	0.984
CTCF M07918_2.00	Homo sapiens	SYGCCMYCTRSYGG	CCRSYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) NHEK_CTCF_UW	0.823	0.984
CTCF M07919_2.00	Homo sapiens	RSYGCCMYCTRSTGG	CCASYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) NHLF_CTCF_Broad	0.823	0.984
CTCF M07920_2.00	Homo sapiens	DSYGCCMYCTDSTGGYNR	YNRCCASHAGRKGGCRSH	ChIP-seq Gerstein et al.(2012) Osteobl_CTCF_Broad	0.823	0.984
CTCF M07921_2.00	Homo sapiens	YGCCMYCTRSTGGYV	BRCCASYAGRKGGCR	ChIP-seq Gerstein et al.(2012) ProgFib_CTCF_UT-A	0.823	0.984
CTCF M07922_2.00	Homo sapiens	YGCCMYCTRSYGG	CCRSYAGRKGGCR	ChIP-seq Gerstein et al.(2012) SAEC_CTCF_UW	0.823	0.984
CTCF M07923_2.00	Homo sapiens	YGCCMYCTRSTGGYN	NRCCASYAGRKGGCR	ChIP-seq Gerstein et al.(2012) SK-N-SH_RA_UW	0.823	0.984
CTCF M07924_2.00	Homo sapiens	RSYGCCMYCTRSTGG	CCASYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) T-47D_CTCF_HudsonAlpha	0.823	0.984
CTCF M07925_2.00	Homo sapiens	RSYGCCMYCTRSTGG	CCASYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) WERI-Rb-1_CTCF_UW	0.823	0.984
Ctcf M08022_2.00	Mus musculus	RSYGCCMYCTDSTGG	CCASHAGRKGGCRSY	ChIP-seq Chen et al.(2011) SRP000217_Ctcf	0.823	0.984
CTCF M08869_2.00	Homo sapiens	BRSYGCCMYCTRSYGGYNR	YNRCCRSYAGRKGGCRSYV	Misc Kulakovskiy et al.(2013) CTCF_HUMAN.H11MO.0.A	0.823	0.984
Ctcf M08966_2.00	Mus musculus	VBRSYGCCMYCTRSYGGYNR	YNRCCRSYAGRKGGCRSYVB	Misc Kulakovskiy et al.(2013) CTCF_MOUSE.H11MO.0.A	0.823	0.984
CTCF M09503_2.00	Homo sapiens	NBRSYGCCMYCTRSTGGHHR	YDDCCASYAGRKGGCRSYVN	Misc Heinz et al.(2010) CD4+-CTCF_Barski_et_al._1	0.823	0.984
CTCF M09504_2.00	Homo sapiens	TGCAGTDCCNVNNNYDRCCA	TGGYHRNNNBNGGHACTGCA	Misc Heinz et al.(2010) CD4+-CTCF_Barski_et_al._2	0.823	0.984
CTCF M10152_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CTCF_01	0.823	0.984
CTCF M10153_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CTCF_02	0.823	0.984
CTCF M10154_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CTCF_05	0.823	0.984
CTCF M10155_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CTCF_06	0.823	0.984
CTCF M10156_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CTCF_07	0.823	0.984
CTCF M10157_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CTCF_08	0.823	0.984
CTCF M10158_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CTCF_10	0.823	0.984
CTCF M10159_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CTCF_Q3_01	0.823	0.984
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSLACP00000011174	C2H2 ZF	309	331	FQCELCSYTCPRRSNLDRHMKSH
ENSLACP00000011174	C2H2 ZF	337	359	HKCHLCGRAFRTVTLLRNHLNTH
ENSLACP00000011174	C2H2 ZF	365	388	HKCPDCDMAFVTSGELVRHRRYKH
ENSLACP00000011174	C2H2 ZF	394	416	FKCSMCDYASVEVSKLKRHIRSH
ENSLACP00000011174	C2H2 ZF	422	444	FQCSLCSYASRDTYKLKRHMRTH
ENSLACP00000011174	C2H2 ZF	450	473	YECYICHARFTQSGTMKMHILQKH
ENSLACP00000011174	C2H2 ZF	480	503	FHCPHCDTVIARKSDLGVHLRKQH
ENSLACP00000011174	C2H2 ZF	510	532	KKCRYCDAVFHERYALIQHQKSH
ENSLACP00000011174	C2H2 ZF	538	560	FKCDQCDYACRQERHMIMHKRTH
ENSLACP00000011174	C2H2 ZF	566	589	YACSHCEKTFRQKQLLDMHFKRYH
ENSLACP00000011174	C2H2 ZF	598	619	FVCTKCGKTFTRRNTMARHAEN

Links
Other C2H2 ZF family TFs
Other *Latimeria chalumnae* TFs

65 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AB00152.1	Alternaria brassicicola	AB00152.1	N	0.000
ARB_04480	Arthroderma benhamiae	ARB_04480	N	0.000
CCM_09117	Cordyceps militaris	CCM_09117	N	0.000
CH063_11689	Colletotrichum higginsianum	CH063_11689	N	0.000
CHGG_05369	Chaetomium globosum	CHGG_05369	N	0.000
Cob_05476	Colletotrichum orbiculare	Cob_05476	N	0.000
COCC4DRAFT_156026	Bipolaris maydis	COCC4DRAFT_156026	N	0.000
COCSADRAFT_213113	Bipolaris sorokiniana	COCSADRAFT_213113	N	0.000
CTHT_0072490	Chaetomium thermophilum	CTHT_0072490	N	0.000
estExt_Genewise1.C_170090	Neurospora discreta	estExt_Genewise1.C_170090	N	0.000
GMDG_08515	Pseudogymnoascus destructans	GMDG_08515	N	0.000
LEMA_P068960.1	Leptosphaeria maculans	LEMA_P068960.1	N	0.000
MCYG_05885	Arthroderma otae	MCYG_05885	N	0.000
MCYG_05885	Microsporum canis	MCYG_05885	N	0.000
MGYG_06086	Microsporum gypseum	MGYG_06086	N	0.000
MYCTH_2061546	Myceliophthora thermophila	MYCTH_2061546	N	0.000
NCU05681	Neurospora crassa	NCU05681	N	0.000
NEUTE1DRAFT_80790	Neurospora tetrasperma	NEUTE1DRAFT_80790	N	0.000
PFICI_12751	Pestalotiopsis fici	PFICI_12751	N	0.000
PMAA_055610	Penicillium marneffei	PMAA_055610	N	0.000
PMAA_055610	Talaromyces marneffei	PMAA_055610	N	0.000
PODANS_7_650	Podospora anserina	PODANS_7_650	N	0.000
PTRG_10690	Pyrenophora triticirepentis	PTRG_10690	N	0.000
PTT_05695	Pyrenophora teres	PTT_05695	N	0.000
PVAR5_1962	Byssochlamys spectabilis	PVAR5_1962	N	0.000
SAPIO_CDS2052	Scedosporium apiospermum	SAPIO_CDS2052	N	0.000
SETTUDRAFT_153515	Setosphaeria turcica	SETTUDRAFT_153515	N	0.000
SMAC_02038	Sordaria macrospora	SMAC_02038	N	0.000
SNOG_09796	Stagonospora nodorum	SNOG_09796	N	0.000
TRIATDRAFT_299214	Trichoderma atroviride	TRIATDRAFT_299214	N	0.000
TSTA_016750	Talaromyces stipitatus	TSTA_016750	N	0.000
V499_03776	Pseudogymnoascus pannorum	V499_03776	N	0.000

ENSLACG00000009833 (Latimeria chalumnae) C2H2 ZF

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

65 Related TFs

ENSLACG00000009833 **(Latimeria chalumnae)
C2H2 ZF**