ENSLOCG00000002246 (Lepisosteus oculatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLOCG00000002246 T097559_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.793 0.853
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.793 0.853
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.793 0.853
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.780 0.890
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.780 0.890
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.780 0.890
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.780 0.890
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.778 0.844
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.778 0.844
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.778 0.844
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.778 0.844
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.770 0.853
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.770 0.853
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.770 0.853
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000002617 C2H2 ZF 170 191
ENSLOCP00000002617 C2H2 ZF 201 222
ENSLOCP00000002617 C2H2 ZF 226 248
ENSLOCP00000002617 C2H2 ZF 254 276
ENSLOCP00000002617 C2H2 ZF 282 303

Links

Other C2H2 ZF family TFs
Other Lepisosteus oculatus TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00119p00040230 Amborella trichopoda AMTR_s00119p00040230 I 0.000
Aquca_027_00052 Aquilegia coerulea Aquca_027_00052 I 0.000
NAC056 Arabidopsis thaliana AT3G15510 I 0.000
BGIOSGA002593 Oryza indica BGIOSGA002593 N 0.000
Bostr.28625s0148 Boechera stricta Bostr.28625s0148 I 0.000
Bra027237 Brassica rapa Bra027237 I 0.000
Carubv10014008m.g Capsella rubella Carubv10014008m.g I 0.000
cassava42314.valid.m1 Manihot esculenta cassava42314.valid.m1 I 0.000
Ca_19654 Cicer arietinum Ca_19654 I 0.000
F775_02328 Aegilops tauschii F775_02328 I 0.000
ATNAC2 Arabidopsis lyrata fgenesh2_kg.3__1698__AT3G15510.1 I 0.000
GLYMA13G35560 Glycine max GLYMA13G35560 I 0.000
GRMZM2G011598 Zea mays GRMZM2G011598 I 0.000
GRMZM2G109627 Zea mays GRMZM2G109627 I 0.000
GRMZM2G430849 Zea mays GRMZM2G430849 I 0.000
GSMUA_Achr1G08860_001 Musa acuminata GSMUA_Achr1G08860_001 I 0.000
GSMUA_Achr3G18010_001 Musa acuminata GSMUA_Achr3G18010_001 I 0.000
GSMUA_Achr4G02380_001 Musa acuminata GSMUA_Achr4G02380_001 I 0.000
GSMUA_Achr7G21770_001 Musa acuminata GSMUA_Achr7G21770_001 I 0.000
GSMUA_Achr9G19520_001 Musa acuminata GSMUA_Achr9G19520_001 I 0.000
GSMUA_AchrUn_randomG17360_001 Musa acuminata GSMUA_AchrUn_randomG17360_001 I 0.000
LPERR01G00250 Leersia perrieri LPERR01G00250 I 0.000
mgf025001m Mimulus guttatus mgf025001m I 0.000
OBART01G00330 Oryza barthii OBART01G00330 N 0.000
OBART03G15960 Oryza barthii OBART03G15960 I 0.000
OGLUM01G00330 Oryza glumaepatula OGLUM01G00330 N 0.000
OGLUM03G16100 Oryza glumaepatula OGLUM03G16100 I 0.000
OLONG_005610 Oryza longistaminata OLONG_005610 I 0.000
OMERI03G14270 Oryza meridionalis OMERI03G14270 I 0.000
ONIVA01G00250 Oryza nivara ONIVA01G00250 N 0.000
ONIVA03G16920 Oryza nivara ONIVA03G16920 I 0.000
OPUNC01G00300 Oryza punctata OPUNC01G00300 I 0.000
OPUNC07G25060 Oryza punctata OPUNC07G25060 I 0.000
ORGLA03G0152700 Oryza glaberrima ORGLA03G0152700 I 0.000
ORUFI01G00290 Oryza rufipogon ORUFI01G00290 N 0.000
ORUFI03G16510 Oryza rufipogon ORUFI03G16510 I 0.000
OS01G0104200 Oryza sativa OS01G0104200 N 0.000
OS03G0327800 Oryza sativa OS03G0327800 I 0.000
Pavir.Ea00837 Panicum virgatum Pavir.Ea00837 I 0.000
Pavir.J22666 Panicum virgatum Pavir.J22666 I 0.000
Pavir.J23256 Panicum virgatum Pavir.J23256 I 0.000
Sb01g036560 Sorghum bicolor Sb01g036560 I 0.000
Si030267m.g Setaria italica Si030267m.g I 0.000
Thhalv10022353m.g Eutrema salsugineum Thhalv10022353m.g I 0.000
TRAES3BF020100160CFD_g Triticum aestivum TRAES3BF020100160CFD_g N 0.000
Traes_2BS_924D34AA1 Triticum aestivum Traes_2BS_924D34AA1 I 0.000
Traes_2BS_C116E5668 Triticum aestivum Traes_2BS_C116E5668 I 0.000
VIT_19s0014g03300 Vitis vinifera VIT_19s0014g03300 I 0.000