PRDM1 (Macaca mulatta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMMUG00000021401 T099593_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM1
M02874_2.00 		Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN		 SELEX
Jolma et al.(2013)
PRDM1_1 		0.827 1.000
PRDM1
M02731_2.00 		Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR		 SELEX
Jolma et al.(2010)
PRDM1_dimer 		0.827 1.000
PRDM1
M04396_2.00 		Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX 		0.827 1.000
PRDM1
M08083_2.00 		Homo sapiens
NHACTTTCHY
RDGAAAGTDN		 ChIP-seq
Mathelier et al.(2014)
MA0508.2 		0.827 1.000
PRDM1
M07845_2.00 		Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford 		0.827 1.000
PRDM1
M08191_2.00 		Homo sapiens
ACTTTCAC
GTGAAAGT		 ChIP-seq
Contrino et al.(2012)
Mv110 		0.827 1.000
PRDM1
M08192_2.00 		Homo sapiens
HRTCACTTT
AAAGTGAYD		 ChIP-seq
Contrino et al.(2012)
Mv112 		0.827 1.000
PRDM1
M08276_2.00 		Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD		 ChIP-seq
Schmitges et al.(2016)
O75626.MEME 		0.827 1.000
PRDM1
M08854_2.00 		Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A 		0.827 1.000
PRDM1
M09500_2.00 		Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT		 Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477 		0.827 1.000
PRDM1
M10108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q4 		0.827 1.000
PRDM1
M10109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01 		0.827 1.000
PRDM1
M10110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6 		0.827 1.000
PRDM1
M10111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM1_03 		0.827 1.000
PRDM1
M04397_2.00 		Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX 		0.827 1.000
Prdm1
M08995_2.00 		Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A 		0.825 0.982
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000028193 C2H2 ZF 575 597
ENSMMUP00000028193 C2H2 ZF 603 625
ENSMMUP00000028193 C2H2 ZF 631 653
ENSMMUP00000028193 C2H2 ZF 659 681
ENSMMUP00000028193 C2H2 ZF 687 708
ENSMMUP00000033313 C2H2 ZF 441 463
ENSMMUP00000033313 C2H2 ZF 469 491
ENSMMUP00000033313 C2H2 ZF 497 519
ENSMMUP00000033313 C2H2 ZF 525 547
ENSMMUP00000033313 C2H2 ZF 553 574

Links

Other C2H2 ZF family TFs
Other Macaca mulatta TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000013892 Ailuropoda melanoleuca ENSAMEG00000013892 I
IRF3 Bos taurus ENSBTAG00000006633 I
ENSBTAP00000031815-D1 Bos grunniens ENSBTAP00000031815-D1 I
IRF3 Callithrix jacchus ENSCJAG00000003637 I
IRF3 Cavia porcellus ENSCPOG00000026146 I
ENSCSAG00000002477 Chlorocebus sabaeus ENSCSAG00000002477 I
IRF3 Dasypus novemcinctus ENSDNOG00000040858 I
IRF3 Equus caballus ENSECAG00000018265 I
IRF3 Felis catus ENSFCAG00000006074 I
IRF3 Homo sapiens ENSG00000126456 D
IRF3 Gorilla gorilla ENSGGOG00000000499 I
IRF3 Macaca mulatta ENSMMUG00000022735 I
ENSMMUP00000031524 Macaca fascicularis ENSMMUP00000031524 I
ENSMPUG00000002477 Mustela putorius furo ENSMPUG00000002477 I
Irf3 Mus musculus ENSMUSG00000003184 D
ENSOARG00000013335 Ovis aries ENSOARG00000013335 I
IRF3 Oryctolagus cuniculus ENSOCUG00000027558 I
IRF3 Otolemur garnettii ENSOGAG00000011935 I
IRF3 Ochotona princeps ENSOPRG00000001971 I
ENSPANG00000014697 Papio anubis ENSPANG00000014697 I
IRF3 Procavia capensis ENSPCAG00000008633 I
ENSPPYG00000010260 Pongo abelii ENSPPYG00000010260 I
ENSPTRG00000011309 Pan troglodytes ENSPTRG00000011309 I
IRF3 Pteropus vampyrus ENSPVAG00000010968 I
Irf3 Rattus norvegicus ENSRNOG00000043388 I
IRF3 Sorex araneus ENSSARG00000006248 I
IRF3 Sus scrofa ENSSSCG00000003178 I
ENSSTOG00000022900 Ictidomys tridecemlineatus ENSSTOG00000022900 I
IRF3 Tursiops truncatus ENSTTRG00000005531 I
Myotis_brandtii_IRF3_10017659 Myotis brandtii Myotis_brandtii_IRF3_10017659 I