Prdm4 (Mus musculus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMUSG00000035529 T101128_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.827 1.000
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.827 1.000
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.827 1.000
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000041942 C2H2 ZF 593 615
ENSMUSP00000041942 C2H2 ZF 621 643
ENSMUSP00000041942 C2H2 ZF 649 671
ENSMUSP00000041942 C2H2 ZF 677 699
ENSMUSP00000041942 C2H2 ZF 705 727
ENSMUSP00000041942 C2H2 ZF 733 754

Links

Other C2H2 ZF family TFs
Other Mus musculus TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GALMADRAFT_271364 Galerina marginata GALMADRAFT_271364 N 0.000
GYMLUDRAFT_181158 Gymnopus luxurians GYMLUDRAFT_181158 I 0.000
K443DRAFT_97730 Laccaria amethystina K443DRAFT_97730 N 0.000
LACBIDRAFT_308011 Laccaria bicolor LACBIDRAFT_308011 N 0.000
PILCRDRAFT_254451 Piloderma croceum PILCRDRAFT_254451 N 0.000
POSPLDRAFT_106184 Postia placenta POSPLDRAFT_106184 I 0.000
SCLCIDRAFT_125598 Scleroderma citrinum SCLCIDRAFT_125598 N 0.000