GFI1 (Otolemur garnettii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSOGAG00000027913 T103709_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.827 1.000
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.827 1.000
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.827 1.000
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.827 1.000
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.827 1.000
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.827 1.000
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.827 1.000
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.827 1.000
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.825 0.993
GFI1
M00237_2.00 		Homo sapiens
ATATCAVD
HBTGATAT		 PBM
Barrera et al.(2016)
GFI1_N382S 		0.790 0.993
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.781 0.877
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.781 0.877
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.781 0.877
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.781 0.877
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.781 0.877
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.781 0.877
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.781 0.877
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.781 0.877
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.781 0.877
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.774 0.848
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.771 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000020358 C2H2 ZF 192 215
ENSOGAP00000020358 C2H2 ZF 221 243
ENSOGAP00000020358 C2H2 ZF 249 271
ENSOGAP00000020358 C2H2 ZF 277 299
ENSOGAP00000020358 C2H2 ZF 305 327
ENSOGAP00000020358 C2H2 ZF 333 356

Links

Other C2H2 ZF family TFs
Other Otolemur garnettii TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB10294.1 Alternaria brassicicola AB10294.1 I
AOL_s00006g157 Arthrobotrys oligospora AOL_s00006g157 I
Bcin11g00730 Botrytis cinerea Bcin11g00730 I
BGHDH14_bgh03873 Blumeria graminis BGHDH14_bgh03873 I
COCC4DRAFT_20732 Bipolaris maydis COCC4DRAFT_20732 I
COCCADRAFT_39951 Bipolaris zeicola COCCADRAFT_39951 I
COCMIDRAFT_35015 Bipolaris oryzae COCMIDRAFT_35015 I
COCSADRAFT_103706 Bipolaris sorokiniana COCSADRAFT_103706 I
COCVIDRAFT_32043 Bipolaris victoriae COCVIDRAFT_32043 I
CTHT_0009920 Chaetomium thermophilum CTHT_0009920 I
DRE_02170 Drechslerella stenobrocha DRE_02170 I
estExt_fgenesh1_pg.C_60367 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_60367 I
estExt_Genewise1.C_21713 Neurospora discreta estExt_Genewise1.C_21713 I
EV44_g5959 Erysiphe necator EV44_g5959 I
fgenesh1_pg.sca_1_chr1_3_0000074 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0000074 I
H072_5364 Dactylellina haptotyla H072_5364 I
M7I_1571 Glarea lozoyensis M7I_1571 I
MAC_07140 Metarhizium acridum MAC_07140 I
MAJ_04550 Metarhizium majus MAJ_04550 I
MANI_013624 Metarhizium anisopliae MANI_013624 I
MBM_05926 Marssonina brunnea MBM_05926 I
MBR_06038 Metarhizium brunneum MBR_06038 I
MGU_06439 Metarhizium guizhouense MGU_06439 I
NCU02724 Neurospora crassa NCU02724 D
NechaG74463 Fusarium solani NechaG74463 I
NEUTE1DRAFT_126349 Neurospora tetrasperma NEUTE1DRAFT_126349 I
PTRG_11389 Pyrenophora triticirepentis PTRG_11389 I
PTT_08645 Pyrenophora teres PTT_08645 I
S40285_05978 Stachybotrys chlorohalonata S40285_05978 I
S40288_06808 Stachybotrys chartarum S40288_06808 I
SBOR_9785 Sclerotinia borealis SBOR_9785 I
SETTUDRAFT_141598 Setosphaeria turcica SETTUDRAFT_141598 I
SMAC_04294 Sordaria macrospora SMAC_04294 I
SS1G_14446 Sclerotinia sclerotiorum SS1G_14446 I
UV8b_2201 Ustilaginoidea virens UV8b_2201 I
X797_005794 Metarhizium robertsii X797_005794 I