bcl11ab (Oryzias latipes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSORLG00000013169 T104900_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.815 0.939
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.815 0.939
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.815 0.939
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.811 0.921
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.811 0.921
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000016507 C2H2 ZF 406 427
ENSORLP00000016507 C2H2 ZF 433 455
ENSORLP00000016507 C2H2 ZF 715 737
ENSORLP00000016507 C2H2 ZF 743 765
ENSORLP00000016507 C2H2 ZF 773 796

Links

Other C2H2 ZF family TFs
Other Oryzias latipes TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD23 Arabidopsis thaliana AT3G26620 D
LBD24 Arabidopsis thaliana AT3G26660 I
Bo00285s360 Brassica oleracea Bo00285s360 I
Bo3g065910 Brassica oleracea Bo3g065910 I
Bo7g083780 Brassica oleracea Bo7g083780 I
Bostr.0556s0333 Boechera stricta Bostr.0556s0333 I
Bra025217 Brassica rapa Bra025217 I
Bra032938 Brassica rapa Bra032938 I
Cagra.3598s0013 Capsella grandiflora Cagra.3598s0013 I
cassava11118.m1 Manihot esculenta cassava11118.m1 I
cassava35977.valid.m1 Manihot esculenta cassava35977.valid.m1 I
Eucgr.A02814 Eucalyptus grandis Eucgr.A02814 I
evm.TU.supercontig_1.335 Carica papaya evm.TU.supercontig_1.335 I
POPTR_0012s13910 Populus trichocarpa POPTR_0012s13910 I
scaffold_500562.1 Arabidopsis lyrata scaffold_500562.1 I
TCM_035123 Theobroma cacao TCM_035123 N
Thhalv10005497m.g Eutrema salsugineum Thhalv10005497m.g I
Thhalv10015971m.g Eutrema salsugineum Thhalv10015971m.g I