PRDM1 (Pan troglodytes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSPTRG00000018457 T108162_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM1
M02874_2.00 		Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN		 SELEX
Jolma et al.(2013)
PRDM1_1 		0.827 1.000
PRDM1
M02731_2.00 		Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR		 SELEX
Jolma et al.(2010)
PRDM1_dimer 		0.827 1.000
PRDM1
M04396_2.00 		Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX 		0.827 1.000
PRDM1
M08083_2.00 		Homo sapiens
NHACTTTCHY
RDGAAAGTDN		 ChIP-seq
Mathelier et al.(2014)
MA0508.2 		0.827 1.000
PRDM1
M07845_2.00 		Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford 		0.827 1.000
PRDM1
M08191_2.00 		Homo sapiens
ACTTTCAC
GTGAAAGT		 ChIP-seq
Contrino et al.(2012)
Mv110 		0.827 1.000
PRDM1
M08192_2.00 		Homo sapiens
HRTCACTTT
AAAGTGAYD		 ChIP-seq
Contrino et al.(2012)
Mv112 		0.827 1.000
PRDM1
M08276_2.00 		Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD		 ChIP-seq
Schmitges et al.(2016)
O75626.MEME 		0.827 1.000
PRDM1
M08854_2.00 		Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A 		0.827 1.000
PRDM1
M09500_2.00 		Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT		 Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477 		0.827 1.000
PRDM1
M10108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q4 		0.827 1.000
PRDM1
M10109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01 		0.827 1.000
PRDM1
M10110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6 		0.827 1.000
PRDM1
M10111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM1_03 		0.827 1.000
PRDM1
M04397_2.00 		Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX 		0.827 1.000
Prdm1
M08995_2.00 		Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A 		0.825 0.982
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000031523 C2H2 ZF 575 597
ENSPTRP00000031523 C2H2 ZF 603 625
ENSPTRP00000031523 C2H2 ZF 631 653
ENSPTRP00000031523 C2H2 ZF 659 681
ENSPTRP00000031523 C2H2 ZF 687 708

Links

Other C2H2 ZF family TFs
Other Pan troglodytes TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000007413 Ailuropoda melanoleuca ENSAMEG00000007413 I
MZF1 Canis familiaris ENSCAFG00000031861 I
MZF1 Callithrix jacchus ENSCJAG00000000218 I
ENSCSAG00000001584 Chlorocebus sabaeus ENSCSAG00000001584 I
MZF1 Dasypus novemcinctus ENSDNOG00000043229 I
MZF1 Equus caballus ENSECAG00000016471 I
MZF1 Felis catus ENSFCAG00000003758 I
MZF1 Homo sapiens ENSG00000099326 D
MZF1 Gorilla gorilla ENSGGOG00000012904 I
MZF1 Loxodonta africana ENSLAFG00000030303 I
MZF1 Macaca mulatta ENSMMUG00000017267 I
Mzf1 Mus musculus ENSMUSG00000030380 D
ENSNLEG00000011231 Nomascus leucogenys ENSNLEG00000011231 I
ENSPANG00000017028 Papio anubis ENSPANG00000017028 I
MZF1 Pan troglodytes ENSPTRG00000011601 I
MZF1 Pteropus vampyrus ENSPVAG00000013983 I
Mzf1 Rattus norvegicus ENSRNOG00000027550 I
ENSSTOG00000020983 Ictidomys tridecemlineatus ENSSTOG00000020983 I
MZF1 Tursiops truncatus ENSTTRG00000002003 I