CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Znf423 *(Rattus norvegicus)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	ENSRNOG00000014658	T109003_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Znf423 M02669_2.00	Rattus norvegicus	KVMMCCYWRGGKKSY	RSMMCCYWRGGKKBM	SELEX Mathelier et al.(2014) MA0116.1	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSRNOP00000020028	C2H2 ZF	21	43	YPCQFCDKSFIRLSYLKRHEQIH
ENSRNOP00000020028	C2H2 ZF	77	99	YHCHECEAAFSRSDHLKIHLKTH
ENSRNOP00000020028	C2H2 ZF	105	127	FKCSVCKRGFSSTSSLQSHMQAH
ENSRNOP00000020028	C2H2 ZF	146	169	FMCDYCEDTFSQTEELEKHVLTLH
ENSRNOP00000020028	C2H2 ZF	178	201	LQCIHCPEVFVDESTLLAHIHQAH
ENSRNOP00000020028	C2H2 ZF	363	386	FHCNYCPEMFADINSLQEHIRVSH
ENSRNOP00000020028	C2H2 ZF	400	423	FFCNQCSMGFLTESSLTEHIQQAH
ENSRNOP00000020028	C2H2 ZF	446	471	YSCPYCTNSPIFGSILKLTKHIKENH
ENSRNOP00000020028	C2H2 ZF	515	537	YPCNQCDLKFSNFESFQTHLKLH
ENSRNOP00000020028	C2H2 ZF	546	567	ACPQCKEDFDSQESLLQHLTVH
ENSRNOP00000020028	C2H2 ZF	575	598	YVCESCDKQFSSVDDLQKHLLDMH
ENSRNOP00000020028	C2H2 ZF	603	626	YHCTLCQEVFDSKVSIQVHLAVKH
ENSRNOP00000020028	C2H2 ZF	633	656	YRCTACNWDFRKEADLQVHVKHSH
ENSRNOP00000020028	C2H2 ZF	690	713	YNCRFCSKAFHAVLLLEKHLREKH
ENSRNOP00000020028	C2H2 ZF	769	792	YGCDICGAAYTMEVLLQNHRLRDH
ENSRNOP00000020028	C2H2 ZF	813	835	HKCNVCSRTFFSENGLREHLQTH
ENSRNOP00000020028	C2H2 ZF	842	864	YMCPICGERFPSLLTLTEHKVTH
ENSRNOP00000020028	C2H2 ZF	1112	1135	FKCPVCFTVFVQANKLQQHIFAVH
ENSRNOP00000020028	C2H2 ZF	1142	1165	YDCSQCPQKFFFQTELQNHTMSQH

Links
Other C2H2 ZF family TFs
Other *Rattus norvegicus* TFs