Prdm6 (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000030486 T109176_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM6
M08277_2.00 		Homo sapiens
TTTTYYWBHHTTTYYHYTBYN
NRVARDRRAAADDVWRRAAAA		 ChIP-seq
Schmitges et al.(2016)
Q9NQX0.MEME 		0.827 1.000
PRDM6
M08855_2.00 		Homo sapiens
NNKTTTTCYYBYB
VRVRRGAAAAMNN		 Misc
Kulakovskiy et al.(2013)
PRDM6_HUMAN.H11MO.0.C 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000041369 C2H2 ZF 476 497
ENSRNOP00000041369 C2H2 ZF 504 526
ENSRNOP00000041369 C2H2 ZF 532 554
ENSRNOP00000041369 C2H2 ZF 560 581

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL012501 Aedes aegypti AAEL012501 N
AALB010370 Anopheles albimanus AALB010370 N
AARA000663 Anopheles arabiensis AARA000663 N
AATE012391 Anopheles atroparvus AATE012391 N
ACHR006509 Anopheles christyi ACHR006509 N
ACUA005983 Anopheles culicifacies ACUA005983 N
AEPI001980 Anopheles epiroticus AEPI001980 N
AFUN002603 Anopheles funestus AFUN002603 N
AGAP011847 Anopheles gambiae AGAP011847 N
AMAM002685 Anopheles maculatus AMAM002685 N
AMEC011551 Anopheles melas AMEC011551 N
AMEM000663 Anopheles merus AMEM000663 N
AMIN008552 Anopheles minimus AMIN008552 N
AQUA009060 Anopheles quadriannulatus AQUA009060 N
ASIS019330 Anopheles sinensis ASIS019330 N
ASTEI05063 Anopheles stephensi ASTEI05063 N
CPIJ001450 Culex quinquefasciatus CPIJ001450 N
CpipJ_CPIJ001450 Culex pipiens CpipJ_CPIJ001450 N