CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Zic2
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000054879
T109332_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin DNA binding activity. Predicted to be involved in nervous system development; regulation of transcription, DNA-templated; and visual perception. Predicted to act upstream of or within several processes, including cilium organization; neural tube closure; and positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry. Predicted to be located in cytoplasm and nuclear body. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in holoprosencephaly and holoprosencephaly 5. Orthologous to human ZIC2 (Zic family member 2). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zic2
M00150_2.00
Mus musculus
NCMYVYNRNN
NNYNRBRKGN
PBM
Badis et al.(2009)
Zic2_2895
0.827
1.000
ZIC2
M08233_2.00
Homo sapiens
BBCCTGCWGNB
VNCWGCAGGVV
ChIP-seq
Najafabadi et al.(2015b)
ZIC2
0.827
1.000
Zic2
M09011_2.00
Mus musculus
NRMYHCCTGCTGDGH
DCHCAGCAGGDRKYN
Misc
Kulakovskiy et al.(2013)
ZIC2_MOUSE.H11MO.0.C
0.827
1.000
ZIC2
M10107_2.00
Homo sapiens
VACCMCCCH
DGGGKGGTB
Transfac
Matys et al.(2006)
V$ZIC2_01
0.827
1.000
Zic1
M00137_2.00
Mus musculus
NCMYVBNGNK
MNCNVBRKGN
PBM
Badis et al.(2009)
Zic1_0991
0.804
0.973
ZIC1
M02893_2.00
Homo sapiens
KRCCCCCYGCTGYG
CRCAGCRGGGGGYM
SELEX
Jolma et al.(2013)
ZIC1_1
0.804
0.973
ZIC1
M04485_2.00
Homo sapiens
BVCCMCCYGYHGYGH
DCRCDRCRGGKGGBV
SELEX
Yin et al.(2017)
ZIC1_eDBD_HT-SELEX
0.804
0.973
ZIC1
M04487_2.00
Homo sapiens
BVCCCCCYGCTGYGH
DCRCAGCRGGGGGBV
SELEX
Yin et al.(2017)
ZIC1_FL_HT-SELEX
0.804
0.973
ZIC1
M08900_2.00
Homo sapiens
BMSCHCCCM
KGGGDGSKV
Misc
Kulakovskiy et al.(2013)
ZIC1_HUMAN.H11MO.0.B
0.804
0.973
Zic1
M08990_2.00
Mus musculus
BMSCHCCCM
KGGGDGSKV
Misc
Kulakovskiy et al.(2013)
ZIC1_MOUSE.H11MO.0.B
0.804
0.973
ZIC1
M10226_2.00
Homo sapiens
KRCNMMCYV
BRGKKNGTM
Transfac
Matys et al.(2006)
V$ZIC1_01
0.804
0.973
ZIC1
M10227_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZIC1_Q2
0.804
0.973
ZIC1
M04486_2.00
Homo sapiens
BACCCCCYRCTGTGM
KCACAGYRGGGGGTV
SELEX
Yin et al.(2017)
ZIC1_eDBD_Methyl-HT-SELEX
0.804
0.973
ZIC1
M04488_2.00
Homo sapiens
BRCCCCCTGCTGTGH
DCACAGCAGGGGGYV
SELEX
Yin et al.(2017)
ZIC1_FL_Methyl-HT-SELEX
0.804
0.973
Zic3
M00151_2.00
Mus musculus
NCMYVBNRNB
VNYNVBRKGN
PBM
Badis et al.(2009)
Zic3_3119
0.795
0.911
ZIC3
M02894_2.00
Homo sapiens
BACCCCCYGCKGYGH
DCRCMGCRGGGGGTV
SELEX
Jolma et al.(2013)
ZIC3_1
0.795
0.911
Zic3
M02936_2.00
Mus musculus
KRCCCCCYGCTGYGH
DCRCAGCRGGGGGYM
SELEX
Jolma et al.(2013)
Zic3_1
0.795
0.911
ZIC3
M04491_2.00
Homo sapiens
VGACCCCCYGCTGTGM
KCACAGCRGGGGGTCB
SELEX
Yin et al.(2017)
ZIC3_eDBD_HT-SELEX
0.795
0.911
ZIC3
M04493_2.00
Homo sapiens
BACCCCCYGCTGYGH
DCRCAGCRGGGGGTV
SELEX
Yin et al.(2017)
ZIC3_FL_HT-SELEX
0.795
0.911
ZIC3
M08902_2.00
Homo sapiens
NVVYHCCTGCTGDGN
NCHCAGCAGGDRBBN
Misc
Kulakovskiy et al.(2013)
ZIC3_HUMAN.H11MO.0.B
0.795
0.911
Zic3
M09013_2.00
Mus musculus
NVVYHCCTGCTGDGN
NCHCAGCAGGDRBBN
Misc
Kulakovskiy et al.(2013)
ZIC3_MOUSE.H11MO.0.A
0.795
0.911
ZIC3
M10229_2.00
Homo sapiens
VRBCMCCCN
NGGGKGVYB
Transfac
Matys et al.(2006)
V$ZIC3_01
0.795
0.911
Zic3
M10359_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZIC3_07
0.795
0.911
ZIC3
M04492_2.00
Homo sapiens
NKACCCCCTGCTGTGM
KCACAGCAGGGGGTMN
SELEX
Yin et al.(2017)
ZIC3_eDBD_Methyl-HT-SELEX
0.795
0.911
ZIC3
M04494_2.00
Homo sapiens
BRCCCCCTGCTGTGM
KCACAGCAGGGGGYV
SELEX
Yin et al.(2017)
ZIC3_FL_Methyl-HT-SELEX
0.795
0.911
ZIC4
M02912_2.00
Homo sapiens
KRCCCCCYGYDGNGH
DCNCHRCRGGGGGYM
SELEX
Jolma et al.(2013)
ZIC4_1
0.788
0.902
ZIC4
M04566_2.00
Homo sapiens
BVCMHCMYRYNRYGH
DCRYNRYRKGDKGBV
SELEX
Yin et al.(2017)
ZIC4_eDBD_HT-SELEX
0.788
0.902
ZIC4
M04567_2.00
Homo sapiens
BRCCHCCYRYBGTKH
DMACVRYRGGDGGYV
SELEX
Yin et al.(2017)
ZIC4_eDBD_Methyl-HT-SELEX
0.788
0.902
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000069986
C2H2 ZF
270
290
KSCNKTFSTMHELVTHVSVEH
ENSRNOP00000069986
C2H2 ZF
299
326
HVCFWEECPREGKPFKAKYKLVNHIRVH
ENSRNOP00000069986
C2H2 ZF
332
356
FPCPFPGCGKVFARSENLKIHKRTH
ENSRNOP00000069986
C2H2 ZF
362
386
FQCEFEGCDRRFANSSDRKKHMHVH
ENSRNOP00000069986
C2H2 ZF
392
414
YLCKMCDKSYTHPSSLRKHMKVH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
236 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy