gfi1ab (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000000651 T111891_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.814 0.957
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.814 0.957
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.814 0.957
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.814 0.957
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.814 0.957
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.814 0.957
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.814 0.957
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.814 0.957
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.812 0.949
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.786 0.891
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.786 0.891
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.786 0.891
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.784 0.884
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.784 0.884
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.784 0.884
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.784 0.884
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.784 0.884
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.784 0.884
GFI1
M00237_2.00 		Homo sapiens
ATATCAVD
HBTGATAT		 PBM
Barrera et al.(2016)
GFI1_N382S 		0.777 0.949
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.774 0.877
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.773 0.848
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000002442 C2H2 ZF 227 250
ENSTNIP00000002442 C2H2 ZF 256 278
ENSTNIP00000002442 C2H2 ZF 284 306
ENSTNIP00000002442 C2H2 ZF 312 334
ENSTNIP00000002442 C2H2 ZF 340 362
ENSTNIP00000002442 C2H2 ZF 368 391

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_02688 Capronia coronata A1O1_02688 N
A1O3_05266 Capronia epimyces A1O3_05266 N
A1O5_01442 Cladophialophora psammophila A1O5_01442 N
A1O7_08334 Cladophialophora yegresii A1O7_08334 N
AB07208.1 Alternaria brassicicola AB07208.1 N
ACRE_022770 Acremonium chrysogenum ACRE_022770 N
BAUCODRAFT_72261 Baudoinia compniacensis BAUCODRAFT_72261 N
BBA_02591 Beauveria bassiana BBA_02591 N
Bcin03g01100 Botrytis cinerea Bcin03g01100 N
ACLA_016070 Aspergillus clavatus CADACLAG00000861 N
AFUA_5G13080 Aspergillus fumigatus CADAFUAG00006036 N
NFIA_073950 Neosartorya fischeri CADNFIAG00007563 N
CCM_03094 Cordyceps militaris CCM_03094 N
CFIO01_11426 Colletotrichum fioriniae CFIO01_11426 N
CGGC5_6062 Colletotrichum gloeosporioides CGGC5_6062 N
CH063_05999 Colletotrichum higginsianum CH063_05999 N
CHGG_02432 Chaetomium globosum CHGG_02432 N
CMQ_5876 Grosmannia clavigera CMQ_5876 N
Cob_11832 Colletotrichum orbiculare Cob_11832 N
COCC4DRAFT_183954 Bipolaris maydis COCC4DRAFT_183954 N
COCCADRAFT_89591 Bipolaris zeicola COCCADRAFT_89591 N
COCMIDRAFT_22048 Bipolaris oryzae COCMIDRAFT_22048 N
COCSADRAFT_130904 Bipolaris sorokiniana COCSADRAFT_130904 N
COCVIDRAFT_34721 Bipolaris victoriae COCVIDRAFT_34721 N
CSUB01_00157 Colletotrichum sublineola CSUB01_00157 N
CTHT_0029190 Chaetomium thermophilum CTHT_0029190 N
EPUS_05767 Endocarpon pusillum EPUS_05767 N
estExt_Genewise1.C_11835 Neurospora discreta estExt_Genewise1.C_11835 N
estExt_Genewise1.C_20573 Cochliobolus heterostrophus C5 estExt_Genewise1.C_20573 N
e_gw1.1.3574.1 Cryphonectria parasitica e_gw1.1.3574.1 N
F503_00183 Ophiostoma piceae uamh F503_00183 N
FFUJ_13348 Fusarium fujikuroi FFUJ_13348 N
FGRRES_20289 Fusarium graminearum FGRRES_20289 N
FOXG_07866 Fusarium oxysporum FOXG_07866 N
FPSE_00911 Fusarium pseudograminearum FPSE_00911 N
FVEG_04788 Fusarium verticillioides FVEG_04788 N
G647_07293 Cladophialophora carrionii G647_07293 N
GGTG_02625 Gaeumannomyces graminis GGTG_02625 N
GLRG_03112 Colletotrichum graminicola GLRG_03112 N
GMDG_07180 Pseudogymnoascus destructans GMDG_07180 N
GSTUM_00005836001 Tuber melanosporum GSTUM_00005836001 N
gw1.6.94.1 Nectria haematococca gw1.6.94.1 N
HMPREF1624_04517 Sporothrix schenckii HMPREF1624_04517 N
LEMA_P044390.1 Leptosphaeria maculans LEMA_P044390.1 N
M437DRAFT_47906 Aureobasidium melanogenum M437DRAFT_47906 N
M438DRAFT_346556 Aureobasidium pullulans M438DRAFT_346556 N
MAC_02105 Metarhizium acridum MAC_02105 N
MAJ_05489 Metarhizium majus MAJ_05489 N
MAM_02243 Metarhizium album MAM_02243 N
MANI_002092 Metarhizium anisopliae MANI_002092 N
MBM_07053 Marssonina brunnea MBM_07053 N
MBR_07319 Metarhizium brunneum MBR_07319 N
MGG_07458 Magnaporthe oryzae MGG_07458 N
MGU_05987 Metarhizium guizhouense MGU_05987 N
MYCTH_2301100 Myceliophthora thermophila MYCTH_2301100 N
NCU09529 Neurospora crassa NCU09529 N
NechaG858 Fusarium solani NechaG858 N
NEUTE1DRAFT_75753 Neurospora tetrasperma NEUTE1DRAFT_75753 N
OCS_02045 Ophiocordyceps sinensis OCS_02045 N
OIDMADRAFT_49755 Oidiodendron maius OIDMADRAFT_49755 N
Pc21g08180 Penicillium chrysogenum Pc21g08180 N
PCH_Pc21g08180 Penicillium rubens PCH_Pc21g08180 N
PDE_07378 Penicillium oxalicum PDE_07378 N
PDIP_58830 Penicillium digitatum PDIP_58830 N
PEX1_060150 Penicillium expansum PEX1_060150 N
PFICI_07761 Pestalotiopsis fici PFICI_07761 N
PITC_074210 Penicillium italicum PITC_074210 N
PODANS_2_8520 Podospora anserina PODANS_2_8520 N
PTRG_06039 Pyrenophora triticirepentis PTRG_06039 N
PTT_08652 Pyrenophora teres PTT_08652 N
PV06_05084 Exophiala oligosperma PV06_05084 N
PV08_09110 Exophiala spinifera PV08_09110 N
PV09_02763 Verruconis gallopava PV09_02763 N
PV11_02440 Exophiala sideris PV11_02440 N
PVAR5_1770 Byssochlamys spectabilis PVAR5_1770 N
S40285_01658 Stachybotrys chlorohalonata S40285_01658 N
S40288_00446 Stachybotrys chartarum S40288_00446 N
SAPIO_CDS8865 Scedosporium apiospermum SAPIO_CDS8865 N
SBOR_3507 Sclerotinia borealis SBOR_3507 N
SPBR_05600 Sporothrix brasiliensis SPBR_05600 N
SS1G_00787 Sclerotinia sclerotiorum SS1G_00787 N
THITE_2107310 Thielavia terrestris THITE_2107310 N
TRIATDRAFT_321925 Trichoderma atroviride TRIATDRAFT_321925 N
TRIREDRAFT_3449 Trichoderma reesei TRIREDRAFT_3449 N
TRIVIDRAFT_229241 Trichoderma virens TRIVIDRAFT_229241 N
U727_0043104031 Penicillium solitum U727_0043104031 N
V499_01680 Pseudogymnoascus pannorum V499_01680 N
VHEMI00945 Torrubiella hemipterigena VHEMI00945 N
X797_006673 Metarhizium robertsii X797_006673 N
Z518_05219 Rhinocladiella mackenziei Z518_05219 N