im:7142702 (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000009693 T112049_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.808 0.929
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.808 0.929
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.789 0.893
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.789 0.893
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.789 0.893
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000012574 C2H2 ZF 350 371
ENSTNIP00000012574 C2H2 ZF 377 399
ENSTNIP00000012574 C2H2 ZF 677 699
ENSTNIP00000012574 C2H2 ZF 705 726
ENSTNIP00000012574 C2H2 ZF 734 755

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pc21g12810 Penicillium chrysogenum Pc21g12810 N
PCH_Pc21g12810 Penicillium rubens PCH_Pc21g12810 N
PEX1_057760 Penicillium expansum PEX1_057760 N
PITC_024470 Penicillium italicum PITC_024470 N