GB53867 (Apis mellifera)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 GB53867 T118062_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.758 0.813
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.758 0.813
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.758 0.802
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.758 0.802
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.758 0.802
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.758 0.802
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.758 0.802
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.758 0.802
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.758 0.802
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.758 0.802
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GB53867-PA C2H2 ZF 349 371
GB53867-PA C2H2 ZF 375 397
GB53867-PA C2H2 ZF 403 425
GB53867-PA C2H2 ZF 431 452

Links

Other C2H2 ZF family TFs
Other Apis mellifera TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000013478 Ailuropoda melanoleuca ENSAMEG00000013478 I 0.758
SNAI1 Bos taurus ENSBTAG00000014554 I 0.758
ENSBTAP00000019345-D1 Bos grunniens ENSBTAP00000019345-D1 I 0.758
SNAI1 Canis familiaris ENSCAFG00000011499 I 0.758
SNAI1 Callithrix jacchus ENSCJAG00000000518 I 0.758
SNAI1 Cavia porcellus ENSCPOG00000026663 I 0.758
ENSCSAG00000015065 Chlorocebus sabaeus ENSCSAG00000015065 I 0.758
SNAI1 Dasypus novemcinctus ENSDNOG00000023834 I 0.758
SNAI1 Equus caballus ENSECAG00000009787 I 0.758
ENSETEG00000016371 Echinops telfairi ENSETEG00000016371 I 0.758
SNAI1 Felis catus ENSFCAG00000010558 I 0.770
SNAI1 Homo sapiens ENSG00000124216 D 0.758
SNAI1 Gorilla gorilla ENSGGOG00000024422 I 0.758
SNAI1 Loxodonta africana ENSLAFG00000030265 I 0.770
ENSMICG00000011160 Microcebus murinus ENSMICG00000011160 I 0.758
ENSMLUG00000015053 Myotis lucifugus ENSMLUG00000015053 I 0.758
ENSMMUG00000019719 Macaca mulatta ENSMMUG00000019719 I 0.758
ENSMPUG00000017558 Mustela putorius furo ENSMPUG00000017558 I 0.758
Snai1 Mus musculus ENSMUSG00000042821 D 0.758
ENSNLEG00000006985 Nomascus leucogenys ENSNLEG00000006985 I 0.758
ENSOARG00000013174 Ovis aries ENSOARG00000013174 I 0.758
SNAI1 Otolemur garnettii ENSOGAG00000030111 I 0.758
ENSPANG00000007536 Papio anubis ENSPANG00000007536 I 0.758
SNAI1 Procavia capensis ENSPCAG00000011934 I 0.758
SNAI1 Pan troglodytes ENSPTRG00000013614 I 0.758
SNAI1 Pteropus vampyrus ENSPVAG00000004119 I 0.758
Snai1 Rattus norvegicus ENSRNOG00000009594 I 0.758
ENSSTOG00000005866 Ictidomys tridecemlineatus ENSSTOG00000005866 I 0.758
SNAI1 Tupaia belangeri ENSTBEG00000012262 I 0.758
SNAI1 Tursiops truncatus ENSTTRG00000002029 I 0.758
GM16048 Drosophila sechellia FBgn0170964 I 0.817
Myotis_brandtii_SNAI1_10026379 Myotis brandtii Myotis_brandtii_SNAI1_10026379 I 0.757