CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
GRMZM5G885700
(
Zea mays
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
GRMZM5G885700
T118638_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM5G885700_P01
C2H2 ZF
62
86
FLCSYEGCGKTFFDAGALRKHAHVH
GRMZM5G885700_P01
C2H2 ZF
91
115
YICHYENCGKKFLDSSKLKRHFLIH
GRMZM5G885700_P01
C2H2 ZF
121
145
FVCPHEGCGKAFSLDFNLKAHMKTH
GRMZM5G885700_P01
C2H2 ZF
151
176
HVCQYPECGRRFTQESKLRAHIRAQH
GRMZM5G885700_P01
C2H2 ZF
215
240
YVCPYDGCDKAYIHEYKLNLHLKKEH
GRMZM5G885700_P02
C2H2 ZF
62
86
FLCSYEGCGKTFFDAGALRKHAHVH
GRMZM5G885700_P02
C2H2 ZF
91
115
YICHYENCGKKFLDSSKLKRHFLIH
GRMZM5G885700_P02
C2H2 ZF
121
145
FVCPHEGCGKAFSLDFNLKAHMKTH
GRMZM5G885700_P02
C2H2 ZF
151
176
HVCQYPECGRRFTQESKLRAHIRAQH
Links
Other
C2H2 ZF
family TFs
Other
Zea mays
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA008411
Oryza indica
BGIOSGA008411
N
0.805
BRADI3G45590
Brachypodium distachyon
BRADI3G45590
N
0.798
F775_26881
Aegilops tauschii
F775_26881
N
0.798
LPERR02G16200
Leersia perrieri
LPERR02G16200
N
0.796
OBART02G20190
Oryza barthii
OBART02G20190
N
0.805
OGLUM02G20510
Oryza glumaepatula
OGLUM02G20510
N
0.805
OLONG_002405
Oryza longistaminata
OLONG_002405
N
0.805
OMERI02G19990
Oryza meridionalis
OMERI02G19990
N
0.805
ONIVA02G22300
Oryza nivara
ONIVA02G22300
N
0.805
OPUNC02G18120
Oryza punctata
OPUNC02G18120
N
0.805
ORGLA02G0173200
Oryza glaberrima
ORGLA02G0173200
N
0.805
ORUFI02G21320
Oryza rufipogon
ORUFI02G21320
N
0.805
OS02G0551900
Oryza sativa
OS02G0551900
N
0.805
Pavir.Aa01761
Panicum virgatum
Pavir.Aa01761
N
0.827
Pavir.Ab01903
Panicum virgatum
Pavir.Ab01903
N
0.827
Sb04g022470
Sorghum bicolor
Sb04g022470
N
0.822
Si017660m.g
Setaria italica
Si017660m.g
N
0.822
Traes_6BL_CC009B78A
Triticum aestivum
Traes_6BL_CC009B78A
N
0.804
Traes_6DL_F47CFC6D9
Triticum aestivum
Traes_6DL_F47CFC6D9
N
0.804