LotgiG129344 (Lottia gigantea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 LotgiG129344 T121647_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.771 0.804
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.771 0.804
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.771 0.804
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.771 0.804
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.771 0.804
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.771 0.804
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.769 0.804
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.769 0.804
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.769 0.804
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.769 0.804
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.769 0.804
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.769 0.804
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.769 0.804
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.769 0.804
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.769 0.804
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.769 0.797
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.769 0.797
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.769 0.797
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.765 0.804
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.761 0.797
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LotgiP129344 C2H2 ZF 2 25
LotgiP129344 C2H2 ZF 31 53
LotgiP129344 C2H2 ZF 59 81
LotgiP129344 C2H2 ZF 87 109
LotgiP129344 C2H2 ZF 115 137
LotgiP129344 C2H2 ZF 143 166

Links

Other C2H2 ZF family TFs
Other Lottia gigantea TFs

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29739.m003683 Ricinus communis 29739.m003683 N
AMTR_s00129p00111730 Amborella trichopoda AMTR_s00129p00111730 N
Aquca_013_00919 Aquilegia coerulea Aquca_013_00919 N
Aquca_020_00580 Aquilegia coerulea Aquca_020_00580 N
ARID4 Arabidopsis thaliana AT3G43240 N
BGIOSGA026888 Oryza indica BGIOSGA026888 N
BGIOSGA029700 Oryza indica BGIOSGA029700 N
Bo3g127310 Brassica oleracea Bo3g127310 N
Bostr.0556s0671 Boechera stricta Bostr.0556s0671 N
Bra034957 Brassica rapa Bra034957 N
BRADI3G37377 Brachypodium distachyon BRADI3G37377 N
BRADI3G37397 Brachypodium distachyon BRADI3G37397 N
BRADI4G31016 Brachypodium distachyon BRADI4G31016 N
Cagra.4079s0001 Capsella grandiflora Cagra.4079s0001 N
Carubv10016730m.g Capsella rubella Carubv10016730m.g N
Ca_16182 Cicer arietinum Ca_16182 N
Ca_18326 Cicer arietinum Ca_18326 N
CHLREDRAFT_186244 Chlamydomonas reinhardtii CHLREDRAFT_186244 N
Ciclev10007563m.g Citrus clementina Ciclev10007563m.g N
Cla012753 Citrullus lanatus Cla012753 N
Cla015761 Citrullus lanatus Cla015761 N
Cucsa.149260 Cucumis sativus Cucsa.149260 N
Cucsa.359860 Cucumis sativus Cucsa.359860 N
estExt_fgenesh1_pg.C_50294 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_50294 N
estExt_fgenesh5_synt.C_400033 Volvox carteri estExt_fgenesh5_synt.C_400033 N
estExt_fgeneshCV_pg.C_50315 Chlorella vulgaris estExt_fgeneshCV_pg.C_50315 N
Eucgr.C00764 Eucalyptus grandis Eucgr.C00764 N
Eucgr.I02158 Eucalyptus grandis Eucgr.I02158 N
evm.TU.supercontig_82.51 Carica papaya evm.TU.supercontig_82.51 N
e_gw1.53.164.1 Physcomitrella patens e_gw1.53.164.1 N
F775_26930 Aegilops tauschii F775_26930 N
fgenesh2_kg.5__785__AT3G43240.1 Arabidopsis lyrata fgenesh2_kg.5__785__AT3G43240.1 N
gene05453-v1.0-hybrid Fragaria vesca gene05453-v1.0-hybrid N
GLYMA07G05050 Glycine max GLYMA07G05050 N
GLYMA09G08690 Glycine max GLYMA09G08690 N
GLYMA15G20380 Glycine max GLYMA15G20380 N
GLYMA16G01560 Glycine max GLYMA16G01560 N
Gorai.001G018000 Gossypium raimondii Gorai.001G018000 N
Gorai.009G038600 Gossypium raimondii Gorai.009G038600 N
Gorai.010G095800 Gossypium raimondii Gorai.010G095800 N
GRMZM2G138976 Zea mays GRMZM2G138976 N
GRMZM2G140156 Zea mays GRMZM2G140156 N
GRMZM5G866423 Zea mays GRMZM5G866423 N
GSMUA_Achr10G18680_001 Musa acuminata GSMUA_Achr10G18680_001 N
GSMUA_Achr11G09250_001 Musa acuminata GSMUA_Achr11G09250_001 N
GSMUA_Achr3G05790_001 Musa acuminata GSMUA_Achr3G05790_001 N
gw1.211.7.1 Physcomitrella patens gw1.211.7.1 N
HelroG69268 Helobdella robusta HelroG69268 N
LPERR09G08040 Leersia perrieri LPERR09G08040 N
Lus10027658.g Linum usitatissimum Lus10027658.g N
Lus10039924.g Linum usitatissimum Lus10039924.g N
MDP0000214795 Malus domestica MDP0000214795 N
MDP0000244853 Malus domestica MDP0000244853 N
MDP0000310024 Malus domestica MDP0000310024 N
mgf013854m Mimulus guttatus mgf013854m N
MLOC_66426 Hordeum vulgare MLOC_66426 N
MTR_2g044550 Medicago truncatula MTR_2g044550 N
MTR_8g022980 Medicago truncatula MTR_8g022980 N
OB09G17930 Oryza brachyantha OB09G17930 N
OBART08G16790 Oryza barthii OBART08G16790 N
OBART09G11370 Oryza barthii OBART09G11370 N
OGLUM08G17510 Oryza glumaepatula OGLUM08G17510 N
OGLUM09G11760 Oryza glumaepatula OGLUM09G11760 N
OLONG_007387 Oryza longistaminata OLONG_007387 N
OMERI01G15670 Oryza meridionalis OMERI01G15670 N
ONIVA08G18320 Oryza nivara ONIVA08G18320 N
ONIVA09G11150 Oryza nivara ONIVA09G11150 N
OPUNC08G14680 Oryza punctata OPUNC08G14680 N
OPUNC09G09840 Oryza punctata OPUNC09G09840 N
orange1.1g004566m.g Citrus sinensis orange1.1g004566m.g N
ORGLA08G0146400 Oryza glaberrima ORGLA08G0146400 N
ORGLA09G0085300 Oryza glaberrima ORGLA09G0085300 N
ORUFI08G18650 Oryza rufipogon ORUFI08G18650 N
ORUFI09G12160 Oryza rufipogon ORUFI09G12160 N
OS08G0451400 Oryza sativa OS08G0451400 N
OSTLU_27261 Ostreococcus lucimarinus OSTLU_27261 N
OSTLU_94134 Ostreococcus lucimarinus OSTLU_94134 N
Pavir.Bb02255 Panicum virgatum Pavir.Bb02255 N
Pavir.Fa00815 Panicum virgatum Pavir.Fa00815 N
Pavir.Fb01510 Panicum virgatum Pavir.Fb01510 N
Pavir.J03302 Panicum virgatum Pavir.J03302 N
PDK_20s1317301g006 Phoenix dactylifera PDK_20s1317301g006 N
PDK_20s1329251g001 Phoenix dactylifera PDK_20s1329251g001 N
PDK_20s1668051g003 Phoenix dactylifera PDK_20s1668051g003 N
PGSC0003DMG400028852 Solanum tuberosum PGSC0003DMG400028852 N
PK11738.1 Cannabis sativa PK11738.1 N
Pm013168 Prunus mume Pm013168 N
POPTR_0006s13780 Populus trichocarpa POPTR_0006s13780 N
POPTR_0018s07250 Populus trichocarpa POPTR_0018s07250 N
PRUPE_ppa001668mg Prunus persica PRUPE_ppa001668mg N
SapurV1A.0121s0150 Salix purpurea SapurV1A.0121s0150 N
SapurV1A.0249s0150 Salix purpurea SapurV1A.0249s0150 N
Sb02g025515 Sorghum bicolor Sb02g025515 N
Sb07g022155 Sorghum bicolor Sb07g022155 N
SELMODRAFT_431374 Selaginella moellendorffii SELMODRAFT_431374 N
SELMODRAFT_449331 Selaginella moellendorffii SELMODRAFT_449331 N
Si013293m.g Setaria italica Si013293m.g N
Si029019m.g Setaria italica Si029019m.g N
Solyc12g049570.1 Solanum lycopersicum Solyc12g049570.1 N
TCM_037452 Theobroma cacao TCM_037452 N
Thhalv10002415m.g Eutrema salsugineum Thhalv10002415m.g N
Traes_5AL_0CF3E9D4A Triticum aestivum Traes_5AL_0CF3E9D4A N
Traes_5BL_114179614 Triticum aestivum Traes_5BL_114179614 N
Traes_5DL_E48356A5C Triticum aestivum Traes_5DL_E48356A5C N
TRIUR3_24005 Triticum urartu TRIUR3_24005 N
VIT_09s0002g00430 Vitis vinifera VIT_09s0002g00430 N
VIT_11s0016g00370 Vitis vinifera VIT_11s0016g00370 N