MTR_1g067640 (Medicago truncatula)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 MTR_1g067640 T123771_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.787 0.826
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.787 0.826
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.776 0.761
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.772 0.783
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.772 0.783
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.771 0.783
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.762 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH42342 C2H2 ZF 38 60
KEH42342 C2H2 ZF 84 106

Links

Other C2H2 ZF family TFs
Other Medicago truncatula TFs

374 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0001283001 Angiostrongylus cantonensis ACAC_0001283001 N
ACAC_0001410501 Angiostrongylus cantonensis ACAC_0001410501 N
ACOC_0000469401 Angiostrongylus costaricensis ACOC_0000469401 N
ACOC_0000510301 Angiostrongylus costaricensis ACOC_0000510301 N
ANCCAN_02247 Ancylostoma caninum ANCCAN_02247 N
ANCCAN_23216 Ancylostoma caninum ANCCAN_23216 N
ANCCAN_24109 Ancylostoma caninum ANCCAN_24109 N
ANCCEY_03736 Ancylostoma ceylanicum ANCCEY_03736 N
ANCDUO_15875 Ancylostoma duodenale ANCDUO_15875 N
ANCDUO_17699 Ancylostoma duodenale ANCDUO_17699 N
ASIM_0001057401 Anisakis simplex ASIM_0001057401 N
ASU_11875 Ascaris suum ASU_11875 N
Bm11274 Brugia malayi Bm11274 N
Bm2582 Brugia malayi Bm2582 N
BTMF_0001630801 Brugia timori BTMF_0001630801 N
CBG21175 Caenorhabditis briggsae CBG21175 N
CBN05278 Caenorhabditis brenneri CBN05278 N
CGOC_0001421301 Cylicostephanus goldi CGOC_0001421301 N
CJA09215 Caenorhabditis japonica CJA09215 N
CRE29369 Caenorhabditis remanei CRE29369 N
DICVIV_00659 Dictyocaulus viviparus DICVIV_00659 N
DICVIV_09133 Dictyocaulus viviparus DICVIV_09133 N
DME_0000059301 Dracunculus medinensis DME_0000059301 N
EEL_0000830101 Elaeophora elaphi EEL_0000830101 N
EVEC_0000194801 Enterobius vermicularis EVEC_0000194801 N
HCOI00330900 Haemonchus contortus HCOI00330900 N
HCOI01806100 Haemonchus contortus HCOI01806100 N
HPBE_0000440101 Heligmosomoides bakeri HPBE_0000440101 N
HPBE_0001513201 Heligmosomoides bakeri HPBE_0001513201 N
HPLM_0002087001 Haemonchus placei HPLM_0002087001 N
L596_g11850 Steinernema carpocapsae L596_g11850 N
L889_g22661 Steinernema feltiae L889_g22661 N
L892_g11119 Steinernema scapterisci L892_g11119 N
L898_g21717 Steinernema monticolum L898_g21717 N
NBR_0000040001 Nippostrongylus brasiliensis NBR_0000040001 N
NBR_0000629001 Nippostrongylus brasiliensis NBR_0000629001 N
NECAME_08826 Necator americanus NECAME_08826 N
NECAME_13951 Necator americanus NECAME_13951 N
nLs.2.1.2.g07235 Litomosoides sigmodontis nLs.2.1.2.g07235 N
OESDEN_11949 Oesophagostomum dentatum OESDEN_11949 N
OESDEN_12713 Oesophagostomum dentatum OESDEN_12713 N
SMUV_0000052701 Syphacia muris SMUV_0000052701 N
TCLT_0000096701 Thelazia callipaeda TCLT_0000096701 N
TCNE_0000182901 Toxocara canis TCNE_0000182901 N
TELCIR_06949 Teladorsagia circumcincta TELCIR_06949 N
TELCIR_17174 Teladorsagia circumcincta TELCIR_17174 N
TELCIR_18013 Teladorsagia circumcincta TELCIR_18013 N
cnd-1 Caenorhabditis elegans WBGene00000561 N
WBGene00244893 Onchocerca volvulus WBGene00244893 N
WUBG_13863 Wuchereria bancrofti WUBG_13863 N