OMERI03G35870 (Oryza meridionalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 OMERI03G35870 T124892_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.784 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.784 0.761
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.783 0.696
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.761 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI03G35870.1 C2H2 ZF 55 77
OMERI03G35870.1 C2H2 ZF 109 131

Links

Other C2H2 ZF family TFs
Other Oryza meridionalis TFs

364 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT2G46040 Arabidopsis thaliana AT2G46040 N
BGIOSGA015617 Oryza indica BGIOSGA015617 N
Bra039294 Brassica rapa Bra039294 N
BRADI5G00630 Brachypodium distachyon BRADI5G00630 N
F775_04400 Aegilops tauschii F775_04400 N
GRMZM2G424651 Zea mays GRMZM2G424651 N
LPERR04G01540 Leersia perrieri LPERR04G01540 N
LPERR10G08380 Leersia perrieri LPERR10G08380 N
MDP0000470728 Malus domestica MDP0000470728 N
OB04G11920 Oryza brachyantha OB04G11920 N
OB10G19040 Oryza brachyantha OB10G19040 N
OGLUM04G01970 Oryza glumaepatula OGLUM04G01970 N
OMERI04G02470 Oryza meridionalis OMERI04G02470 N
ONIVA08G18490 Oryza nivara ONIVA08G18490 N
OPUNC04G02270 Oryza punctata OPUNC04G02270 N
ORUFI04G03050 Oryza rufipogon ORUFI04G03050 N
OS04G0166400 Oryza sativa OS04G0166400 N
Pavir.J12660 Panicum virgatum Pavir.J12660 N
Sb06g001680 Sorghum bicolor Sb06g001680 N
Si012339m.g Setaria italica Si012339m.g N
Si038535m.g Setaria italica Si038535m.g N
Traes_2AS_6F531FBB5 Triticum aestivum Traes_2AS_6F531FBB5 N
Traes_2BS_1E88E202F Triticum aestivum Traes_2BS_1E88E202F N