PGSC0003DMG400011548 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400011548 T125815_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.812 0.870
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.739
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.717
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.794 0.848
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.787 0.804
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.787 0.804
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.787 0.804
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.777 0.783
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.777 0.783
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.696
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.760 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400030168 C2H2 ZF 85 107
PGSC0003DMT400030168 C2H2 ZF 132 154

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

294 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O7_07585 Cladophialophora yegresii A1O7_07585 N 0.000
CH063_08532 Colletotrichum higginsianum CH063_08532 N 0.000
CSUB01_09245 Colletotrichum sublineola CSUB01_09245 N 0.000
estExt_fgenesh1_pg.C_sca_1_chr1_3_01001 Nectria haematococca estExt_fgenesh1_pg.C_sca_1_chr1_3_01001 N 0.000
FGRRES_00774 Fusarium graminearum FGRRES_00774 N 0.000
FPSE_09241 Fusarium pseudograminearum FPSE_09241 N 0.000
GLRG_00869 Colletotrichum graminicola GLRG_00869 N 0.000
MAJ_05894 Metarhizium majus MAJ_05894 N 0.000
MANI_022808 Metarhizium anisopliae MANI_022808 N 0.000
MBR_00131 Metarhizium brunneum MBR_00131 N 0.000
MGU_09468 Metarhizium guizhouense MGU_09468 N 0.000
MYCTH_44604 Myceliophthora thermophila MYCTH_44604 N 0.000
NechaG98980 Fusarium solani NechaG98980 N 0.000
OCS_05113 Ophiocordyceps sinensis OCS_05113 N 0.000
OIDMADRAFT_125400 Oidiodendron maius OIDMADRAFT_125400 N 0.000
PEX1_002100 Penicillium expansum PEX1_002100 N 0.000
PFICI_10838 Pestalotiopsis fici PFICI_10838 N 0.000
PV06_02513 Exophiala oligosperma PV06_02513 N 0.000
TRIATDRAFT_291139 Trichoderma atroviride TRIATDRAFT_291139 N 0.000
TRIVIDRAFT_59868 Trichoderma virens TRIVIDRAFT_59868 N 0.000
X797_002486 Metarhizium robertsii X797_002486 N 0.000