PGSC0003DMG400028275 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400028275 T125842_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.791 0.818
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.789 0.727
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.789 0.705
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.773 0.795
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.771 0.773
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.771 0.773
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.771 0.773
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.766 0.682
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.756 0.727
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.756 0.727
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400072661 C2H2 ZF 81 103
PGSC0003DMT400072661 C2H2 ZF 141 161

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

204 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_191136 Agaricus bisporus AGABI2DRAFT_191136 N 0.000
BN946_scf184939.g72 Trametes cinnabarina BN946_scf184939.g72 N 0.000
CC1G_07059 Coprinopsis cinerea CC1G_07059 N 0.000
CY34DRAFT_12675 Suillus luteus CY34DRAFT_12675 N 0.000
fgenesh1_pg.C_scaffold_4000174 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_4000174 N 0.000
fgenesh3_kg.11__36__641_1_CCOZ_CCPA_CCPB_CCPC_EXTA Heterobasidion annosum fgenesh3_kg.11__36__641_1_CCOZ_CCPA_CCPB_CCPC_EXTA N 0.000
FOMPIDRAFT_132799 Fomitopsis pinicola FOMPIDRAFT_132799 N 0.000
GALMADRAFT_244440 Galerina marginata GALMADRAFT_244440 N 0.000
GLOTRDRAFT_78300 Gloeophyllum trabeum GLOTRDRAFT_78300 N 0.000
HETIRDRAFT_439748 Heterobasidion irregulare HETIRDRAFT_439748 N 0.000
JAAARDRAFT_47740 Jaapia argillacea JAAARDRAFT_47740 N 0.000
K443DRAFT_670658 Laccaria amethystina K443DRAFT_670658 N 0.000
LACBIDRAFT_296989 Laccaria bicolor LACBIDRAFT_296989 N 0.000
M378DRAFT_463994 Amanita muscaria M378DRAFT_463994 I 0.000
M378DRAFT_9324 Amanita muscaria M378DRAFT_9324 N 0.000
M413DRAFT_29155 Hebeloma cylindrosporum M413DRAFT_29155 N 0.000
Moror_12870 Moniliophthora roreri Moror_12870 N 0.000
PAXINDRAFT_170453 Paxillus involutus PAXINDRAFT_170453 N 0.000
PAXRUDRAFT_822144 Paxillus rubicundulus PAXRUDRAFT_822144 N 0.000
PHLGIDRAFT_125548 Phlebiopsis gigantea PHLGIDRAFT_125548 N 0.000
PILCRDRAFT_401124 Piloderma croceum PILCRDRAFT_401124 N 0.000
PILCRDRAFT_819471 Piloderma croceum PILCRDRAFT_819471 N 0.000
PISMIDRAFT_112540 Pisolithus microcarpus PISMIDRAFT_112540 N 0.000
PLEOSDRAFT_174562 Pleurotus ostreatus PLEOSDRAFT_174562 N 0.000
PLICRDRAFT_45259 Plicaturopsis crispa PLICRDRAFT_45259 N 0.000
SCHCODRAFT_76401 Schizophyllum commune SCHCODRAFT_76401 N 0.000
SERLA73DRAFT_181394 Serpula lacrymans SERLA73DRAFT_181394 N 0.000