PGSC0003DMG400041467 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400041467 T125853_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.807 0.848
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.739
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.717
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.792 0.826
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.792 0.826
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.792 0.826
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.788 0.826
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.696
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.772 0.761
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.772 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400091896 C2H2 ZF 59 81
PGSC0003DMT400091896 C2H2 ZF 106 128

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

226 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARB_05846 Arthroderma benhamiae ARB_05846 I
BDDG_07417 Blastomyces dermatitidis BDDG_07417 N
H101_07631 Trichophyton interdigitale H101_07631 I
H102_02966 Trichophyton rubrum H102_02966 I
H105_02985 Trichophyton soudanense H105_02985 I
MCYG_02590 Microsporum canis MCYG_02590 I
MCYG_02590 Arthroderma otae MCYG_02590 I
PAAG_04842 Paracoccidioides sp lutzii PAAG_04842 N
PABG_00183 Paracoccidioides brasiliensis PABG_00183 N
TEQG_05652 Trichophyton equinum TEQG_05652 I
TESG_01622 Trichophyton tonsurans TESG_01622 I
TRV_01026 Trichophyton verrucosum TRV_01026 I