PGSC0003DMG400045547 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400045547 T125854_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.778 0.810
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.769 0.690
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.769 0.667
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.762 0.762
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.762 0.762
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.759 0.786
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.757 0.762
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.757 0.762
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.757 0.762
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400095976 C2H2 ZF 49 71
PGSC0003DMT400095976 C2H2 ZF 109 127

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R010877 Calypte anna Aan_R010877 N 0.000
ENSAMEG00000006857 Ailuropoda melanoleuca ENSAMEG00000006857 N 0.000
ENSAMXG00000010244 Astyanax mexicanus ENSAMXG00000010244 N 0.000
ENSAMXG00000018187 Astyanax mexicanus ENSAMXG00000018187 N 0.000
L3MBTL4 Canis familiaris ENSCAFG00000018588 N 0.000
L3MBTL4 Callithrix jacchus ENSCJAG00000015716 N 0.000
ENSCSAG00000017582 Chlorocebus sabaeus ENSCSAG00000017582 N 0.000
l3mbtl3 Danio rerio ENSDARG00000025983 N 0.000
L3MBTL4 Danio rerio ENSDARG00000094780 N 0.000
L3MBTL4 Dasypus novemcinctus ENSDNOG00000006559 N 0.000
L3mbtl4 Dipodomys ordii ENSDORG00000013048 N 0.000
L3MBTL4 Felis catus ENSFCAG00000031842 N 0.000
L3MBTL4 Homo sapiens ENSG00000154655 N 0.000
L3MBTL4 Gasterosteus aculeatus ENSGACG00000001138 N 0.000
L3MBTL4 Gorilla gorilla ENSGGOG00000015056 N 0.000
ENSGMOG00000012699 Gadus morhua ENSGMOG00000012699 N 0.000
ENSLACG00000022431 Latimeria chalumnae ENSLACG00000022431 N 0.000
ENSLOCG00000003008 Lepisosteus oculatus ENSLOCG00000003008 N 0.000
ENSLOCG00000017277 Lepisosteus oculatus ENSLOCG00000017277 N 0.000
L3MBTL4 Microcebus murinus ENSMICG00000015626 N 0.000
L3MBTL4 Myotis lucifugus ENSMLUG00000002011 N 0.000
L3MBTL4 Macaca mulatta ENSMMUG00000016302 N 0.000
L3MBTL4 Monodelphis domestica ENSMODG00000021457 N 0.000
ENSMPUG00000004964 Mustela putorius furo ENSMPUG00000004964 N 0.000
L3mbtl4 Mus musculus ENSMUSG00000041565 N 0.000
ENSNLEG00000006925 Nomascus leucogenys ENSNLEG00000006925 N 0.000
L3MBTL4 Oryctolagus cuniculus ENSOCUG00000013013 N 0.000
L3MBTL4 Otolemur garnettii ENSOGAG00000006203 N 0.000
ENSONIG00000015120 Oreochromis niloticus ENSONIG00000015120 N 0.000
ENSORLG00000019825 Oryzias latipes ENSORLG00000019825 N 0.000
ENSP00000382976 Macaca fascicularis ENSP00000382976 N 0.000
ENSPANG00000008894 Papio anubis ENSPANG00000008894 N 0.000
ENSPFOG00000009224 Poecilia formosa ENSPFOG00000009224 N 0.000
ENSPMAG00000002300 Petromyzon marinus ENSPMAG00000002300 N 0.000
ENSPPYG00000009022 Pongo abelii ENSPPYG00000009022 N 0.000
L3MBTL4 Pan troglodytes ENSPTRG00000009845 N 0.000
L3MBTL4 Pteropus vampyrus ENSPVAG00000002970 N 0.000
L3mbtl4 Rattus norvegicus ENSRNOG00000025273 N 0.000
L3MBTL4 Sorex araneus ENSSARG00000006794 N 0.000
ENSSHAG00000012679 Sarcophilus harrisii ENSSHAG00000012679 N 0.000
L3MBTL4 Tetraodon nigroviridis ENSTNIG00000004386 N 0.000
L3MBTL4 Takifugu rubripes ENSTRUG00000001294 N 0.000
ENSTSYG00000003474 Tarsius syrichta ENSTSYG00000003474 N 0.000
L3MBTL4 Tursiops truncatus ENSTTRG00000012966 N 0.000
ENSXMAG00000014347 Xiphophorus maculatus ENSXMAG00000014347 N 0.000
LotgiG216594 Lottia gigantea LotgiG216594 N 0.000
Myotis_brandtii_L3MBTL4_10019905 Myotis brandtii Myotis_brandtii_L3MBTL4_10019905 N 0.000
NEMVEDRAFT_v1g187589 Nematostella vectensis NEMVEDRAFT_v1g187589 N 0.000
NEMVEDRAFT_v1g20650 Nematostella vectensis NEMVEDRAFT_v1g20650 N 0.000
Sakowv30043999m.g Saccoglossus kowalevskii Sakowv30043999m.g N 0.000